Long noncoding RNAs in plants

AT Wierzbicki, T Blevins… - Annual Review of Plant …, 2021 - annualreviews.org
Plants have an extraordinary diversity of transcription machineries, including five nuclear
DNA-dependent RNA polymerases. Four of these enzymes are dedicated to the production …

Protein phosphorylation: A molecular switch in plant signaling

WJ Zhang, Y Zhou, Y Zhang, YH Su, T Xu - Cell Reports, 2023 - cell.com
Protein phosphorylation modification is crucial for signaling transduction in plant
development and environmental adaptation. By precisely phosphorylating crucial …

Tuning plant phenotypes by precise, graded downregulation of gene expression

C Xue, F Qiu, Y Wang, B Li, KT Zhao, K Chen… - Nature …, 2023 - nature.com
The ability to control gene expression and generate quantitative phenotypic changes is
essential for breeding new and desired traits into crops. Here we report an efficient, facile …

Allele-aware chromosome-level genome assembly of Artemisia annua reveals the correlation between ADS expansion and artemisinin yield

B Liao, X Shen, L Xiang, S Guo, S Chen, Y Meng… - Molecular plant, 2022 - cell.com
Artemisia annua is the major natural source of artemisinin, an anti-malarial medicine
commonly used worldwide. Here, we present chromosome-level haploid maps for two A …

Alternative splicing landscapes in Arabidopsis thaliana across tissues and stress conditions highlight major functional differences with animals

G Martín, Y Márquez, F Mantica, P Duque, M Irimia - Genome biology, 2021 - Springer
Background Alternative splicing (AS) is a widespread regulatory mechanism in multicellular
organisms. Numerous transcriptomic and single-gene studies in plants have investigated AS …

Synthetic promoter designs enabled by a comprehensive analysis of plant core promoters

T Jores, J Tonnies, T Wrightsman, ES Buckler… - Nature Plants, 2021 - nature.com
Targeted engineering of plant gene expression holds great promise for ensuring food
security and for producing biopharmaceuticals in plants. However, this engineering requires …

Seed 'primeomics': plants memorize their germination under stress

AK Srivastava, J Suresh Kumar… - Biological …, 2021 - Wiley Online Library
Seed priming is a pre‐germination treatment administered through various chemical,
physical and biological agents, which induce mild stress during the early phases of …

Rhizosphere engineering for soil carbon sequestration

C Wang, Y Kuzyakov - Trends in Plant Science, 2024 - cell.com
The rhizosphere is the central hotspot of water and nutrient uptake by plants,
rhizodeposition, microbial activities, and plant-soil-microbial interactions. The plasticity of …

Evolutionarily informed deep learning methods for predicting relative transcript abundance from DNA sequence

JD Washburn, MK Mejia-Guerra… - Proceedings of the …, 2019 - National Acad Sciences
Deep learning methodologies have revolutionized prediction in many fields and show
potential to do the same in molecular biology and genetics. However, applying these …

Emerging concepts of potassium homeostasis in plants

AK Srivastava, A Shankar… - Journal of …, 2020 - academic.oup.com
Potassium (K+) is an essential cation in all organisms that influences crop production and
ecosystem stability. Although most soils are rich in K minerals, relatively little K+ is present in …