Single-cell transcriptomics to explore the immune system in health and disease
MJT Stubbington, O Rozenblatt-Rosen, A Regev… - Science, 2017 - science.org
The immune system varies in cell types, states, and locations. The complex networks,
interactions, and responses of immune cells produce diverse cellular ecosystems composed …
interactions, and responses of immune cells produce diverse cellular ecosystems composed …
[HTML][HTML] Causes and consequences of hematopoietic stem cell heterogeneity
Blood and immune cells derive from multipotent hematopoietic stem cells (HSCs).
Classically, stem and progenitor populations have been considered discrete homogeneous …
Classically, stem and progenitor populations have been considered discrete homogeneous …
Single-cell transcriptional diversity is a hallmark of developmental potential
GS Gulati, SS Sikandar, DJ Wesche, A Manjunath… - Science, 2020 - science.org
Single-cell RNA sequencing (scRNA-seq) is a powerful approach for reconstructing cellular
differentiation trajectories. However, inferring both the state and direction of differentiation is …
differentiation trajectories. However, inferring both the state and direction of differentiation is …
[HTML][HTML] Integrative single-cell RNA-seq and ATAC-seq analysis of human developmental hematopoiesis
Regulation of hematopoiesis during human development remains poorly defined. Here we
applied single-cell RNA sequencing (scRNA-seq) and single-cell assay for transposase …
applied single-cell RNA sequencing (scRNA-seq) and single-cell assay for transposase …
[HTML][HTML] Comparative analysis of single-cell RNA sequencing methods
Single-cell RNA sequencing (scRNA-seq) offers new possibilities to address biological and
medical questions. However, systematic comparisons of the performance of diverse scRNA …
medical questions. However, systematic comparisons of the performance of diverse scRNA …
Whole-organism clone tracing using single-cell sequencing
Embryonic development is a crucial period in the life of a multicellular organism, during
which limited sets of embryonic progenitors produce all cells in the adult body. Determining …
which limited sets of embryonic progenitors produce all cells in the adult body. Determining …
SpatialDE: identification of spatially variable genes
Technological advances have made it possible to measure spatially resolved gene
expression at high throughput. However, methods to analyze these data are not established …
expression at high throughput. However, methods to analyze these data are not established …
[HTML][HTML] Single-cell proteo-genomic reference maps of the hematopoietic system enable the purification and massive profiling of precisely defined cell states
Single-cell genomics technology has transformed our understanding of complex cellular
systems. However, excessive cost and a lack of strategies for the purification of newly …
systems. However, excessive cost and a lack of strategies for the purification of newly …
[HTML][HTML] Disease-relevant transcriptional signatures identified in individual smooth muscle cells from healthy mouse vessels
L Dobnikar, AL Taylor, J Chappell, P Oldach… - Nature …, 2018 - nature.com
Vascular smooth muscle cells (VSMCs) show pronounced heterogeneity across and within
vascular beds, with direct implications for their function in injury response and …
vascular beds, with direct implications for their function in injury response and …
New paradigms on hematopoietic stem cell differentiation
H Cheng, Z Zheng, T Cheng - Protein & cell, 2020 - academic.oup.com
Ever since hematopoietic stem cells (HSCs) were first identified half a century ago, their
differentiation roadmap has been extensively studied. The classical model of hematopoiesis …
differentiation roadmap has been extensively studied. The classical model of hematopoiesis …