Methods and applications for single-cell and spatial multi-omics

K Vandereyken, A Sifrim, B Thienpont… - Nature Reviews Genetics, 2023 - nature.com
The joint analysis of the genome, epigenome, transcriptome, proteome and/or metabolome
from single cells is transforming our understanding of cell biology in health and disease. In …

Spatial omics technologies at multimodal and single cell/subcellular level

J Park, J Kim, T Lewy, CM Rice, O Elemento… - Genome Biology, 2022 - Springer
Spatial omics technologies enable a deeper understanding of cellular organizations and
interactions within a tissue of interest. These assays can identify specific compartments or …

Into the multiverse: advances in single-cell multiomic profiling

S Ogbeide, F Giannese, L Mincarelli, IC Macaulay - Trends in Genetics, 2022 - cell.com
Single-cell transcriptomic approaches have revolutionised the study of complex biological
systems, with the routine measurement of gene expression in thousands of cells enabling …

[HTML][HTML] Spatially resolved transcriptomics: a comprehensive review of their technological advances, applications, and challenges

M Cheng, Y Jiang, J Xu, AFA Mentis, S Wang… - Journal of Genetics and …, 2023 - Elsevier
The ability to explore life kingdoms is largely driven by innovations and breakthroughs in
technology, from the invention of the microscope 350 years ago to the recent emergence of …

Spatial transcriptomics technology in cancer research

Q Yu, M Jiang, L Wu - Frontiers in Oncology, 2022 - frontiersin.org
In recent years, spatial transcriptomics (ST) technologies have developed rapidly and have
been widely used in constructing spatial tissue atlases and characterizing spatiotemporal …

[HTML][HTML] Spatial-CITE-seq: spatially resolved high-plex protein and whole transcriptome co-mapping

Y Liu, M DiStasio, G Su, H Asashima, A Enninful… - Research …, 2022 - ncbi.nlm.nih.gov
We present spatial-CITE-seq for high-plex protein and whole transcriptome co-mapping,
which was firstly demonstrated for profiling 189 proteins and transcriptome in multiple …

Spatially resolved host-bacteria-fungi interactomes via spatial metatranscriptomics

S Saarenpää, O Shalev, H Ashkenazy… - BioRxiv, 2022 - biorxiv.org
All multicellular organisms are closely associated with microbes, which have a major impact
on the health of their host. The interactions of microbes among themselves and with the host …

Spatiotemporal Omics-Refining the landscape of precision medicine

J Zhang, J Yin, Y Heng, K Xie, A Chen, I Amit… - Life …, 2022 - academic.oup.com
Current streamline of precision medicine uses histomorphological and molecular
information to indicate individual phenotypes and genotypes to achieve optimal outcome of …

[HTML][HTML] Breast cancer macrophage heterogeneity and self-renewal are determined by spatial localization

N Ben-Chetrit, X Niu, J Sotelo, AD Swett… - bioRxiv, 2023 - ncbi.nlm.nih.gov
Tumor-infiltrating macrophages support critical steps in tumor progression, and their
accumulation in the tumor microenvironment (TME) is associated with adverse outcomes …

History of key regulatory peptide systems and perspectives for future research

D Chen, JF Rehfeld, AG Watts… - Journal of …, 2023 - Wiley Online Library
Throughout the 20th Century, regulatory peptide discovery advanced from the identification
of gut hormones to the extraction and characterization of hypothalamic hypophysiotropic …