Tools for genetic studies in experimental populations of polyploids
Polyploid organisms carry more than two copies of each chromosome, a condition rarely
tolerated in animals but which occurs relatively frequently in the plant kingdom. One of the …
tolerated in animals but which occurs relatively frequently in the plant kingdom. One of the …
Connecting genome structural variation with complex traits in crop plants
Key message Structural genome variation is a major determinant of useful trait diversity. We
describe how genome analysis methods are enabling discovery of trait-associated structural …
describe how genome analysis methods are enabling discovery of trait-associated structural …
Development and evaluation of a barley 50k iSelect SNP array
MM Bayer, P Rapazote-Flores, M Ganal… - Frontiers in plant …, 2017 - frontiersin.org
High-throughput genotyping arrays continue to be an attractive, cost-effective alternative to
sequencing based approaches. We have developed a new 50k Illumina Infinium iSelect …
sequencing based approaches. We have developed a new 50k Illumina Infinium iSelect …
Development and applications of a high throughput genotyping tool for polyploid crops: single nucleotide polymorphism (SNP) array
Polypoid species play significant roles in agriculture and food production. Many crop
species are polyploid, such as potato, wheat, strawberry, and sugarcane. Genotyping has …
species are polyploid, such as potato, wheat, strawberry, and sugarcane. Genotyping has …
Plant genotype to phenotype prediction using machine learning
Genomic prediction tools support crop breeding based on statistical methods, such as the
genomic best linear unbiased prediction (GBLUP). However, these tools are not designed to …
genomic best linear unbiased prediction (GBLUP). However, these tools are not designed to …
Haplotype blocks for genomic prediction: a comparative evaluation in multiple crop datasets
SE Weber, M Frisch, RJ Snowdon… - Frontiers in Plant …, 2023 - frontiersin.org
In modern plant breeding, genomic selection is becoming the gold standard for selection of
superior genotypes. The basis for genomic prediction models is a set of phenotyped lines …
superior genotypes. The basis for genomic prediction models is a set of phenotyped lines …
How population structure impacts genomic selection accuracy in cross-validation: implications for practical breeding
Over the last two decades, the application of genomic selection has been extensively
studied in various crop species, and it has become a common practice to report prediction …
studied in various crop species, and it has become a common practice to report prediction …
Mapping of homoeologous chromosome exchanges influencing quantitative trait variation in Brassica napus
A Stein, O Coriton, M Rousseau‐Gueutin… - Plant biotechnology …, 2017 - Wiley Online Library
Genomic rearrangements arising during polyploidization are an important source of genetic
and phenotypic variation in the recent allopolyploid crop Brassica napus. Exchanges among …
and phenotypic variation in the recent allopolyploid crop Brassica napus. Exchanges among …
Breeding Canola (Brassica napus L.) for Protein in Feed and Food
KKY So, RW Duncan - Plants, 2021 - mdpi.com
Interest in canola (Brassica napus L.). In response to this interest, scientists have been
tasked with altering and optimizing the protein production chain to ensure canola proteins …
tasked with altering and optimizing the protein production chain to ensure canola proteins …
Gene presence-absence variation associates with quantitative Verticillium longisporum disease resistance in Brassica napus
Although copy number variation (CNV) and presence-absence variation (PAV) have been
discovered in selected gene families in most crop species, the global prevalence of these …
discovered in selected gene families in most crop species, the global prevalence of these …