Aptamers from random sequence space: Accomplishments, gaps and future considerations

S Qian, D Chang, S He, Y Li - Analytica Chimica Acta, 2022 - Elsevier
Aptamers are molecular recognition elements made of nucleic acids. Diverse synthetic
aptamers have been discovered in a large number of SELEX experiments since 1990. This …

An overview of duplicated gene detection methods: Why the duplication mechanism has to be accounted for in their choice

T Lallemand, M Leduc, C Landès, C Rizzon, E Lerat - Genes, 2020 - mdpi.com
Gene duplication is an important evolutionary mechanism allowing to provide new genetic
material and thus opportunities to acquire new gene functions for an organism, with major …

Chapter 4: Protein interactions and disease

MW Gonzalez, MG Kann - PLoS computational biology, 2012 - journals.plos.org
Proteins do not function in isolation; it is their interactions with one another and also with
other molecules (eg DNA, RNA) that mediate metabolic and signaling pathways, cellular …

Classification and prediction of protein–protein interaction interface using machine learning algorithm

S Das, S Chakrabarti - Scientific reports, 2021 - nature.com
Structural insight of the protein–protein interaction (PPI) interface can provide knowledge
about the kinetics, thermodynamics and molecular functions of the complex while …

Patterns of positive selection in six mammalian genomes

C Kosiol, T Vinař, RR da Fonseca, MJ Hubisz… - PLoS …, 2008 - journals.plos.org
Genome-wide scans for positively selected genes (PSGs) in mammals have provided insight
into the dynamics of genome evolution, the genetic basis of differences between species …

Converting peptides into drugs targeting intracellular protein–protein interactions

GJB Philippe, DJ Craik, ST Henriques - Drug Discovery Today, 2021 - Elsevier
Highlights•Cyclic peptides are ideal inhibitors of protein–protein interactions (PPIs), due to
low immunogenicity and large surface area.•Peptide libraries are excellent tools to screen …

Himalayan bioactive molecules as potential entry inhibitors for the human immunodeficiency virus

VK Bhardwaj, R Purohit, S Kumar - Food Chemistry, 2021 - Elsevier
The human immunodeficiency virus interacts with the cluster of differentiation 4 receptors
and one of the two chemokine receptors (CCR5 and CXCR4) to gain entry in human cells …

Evolutionary Rate Covariation Identifies New Members of a Protein Network Required for Drosophila melanogaster Female Post-Mating Responses

GD Findlay, JL Sitnik, W Wang, CF Aquadro… - PLoS …, 2014 - journals.plos.org
Seminal fluid proteins transferred from males to females during copulation are required for
full fertility and can exert dramatic effects on female physiology and behavior. In Drosophila …

Bioinformatics approaches and big data analytics opportunities in improving fisheries and aquaculture

MA Rather, D Agarwal, TA Bhat, IA Khan, I Zafar… - International Journal of …, 2023 - Elsevier
Aquaculture has witnessed an excellent growth rate during the last two decades and offers
huge potential to provide nutritional as well as livelihood security. Genomic research has …

Protein co‐evolution, co‐adaptation and interactions

F Pazos, A Valencia - The EMBO journal, 2008 - embopress.org
Co‐evolution has an important function in the evolution of species and it is clearly
manifested in certain scenarios such as host–parasite and predator–prey interactions …