Computational intelligence approaches for pattern discovery in biological systems
GB Fogel - Briefings in bioinformatics, 2008 - academic.oup.com
Biology, chemistry and medicine are faced by tremendous challenges caused by an
overwhelming amount of data and the need for rapid interpretation. Computational …
overwhelming amount of data and the need for rapid interpretation. Computational …
Multi-objective evolutionary algorithms and phylogenetic inference with multiple data sets
L Poladian, LS Jermiin - Soft Computing, 2006 - Springer
Evolutionary relationships among species are usually (1) illustrated by means of a
phylogenetic tree and (2) inferred by optimising some measure of fitness, such as the total …
phylogenetic tree and (2) inferred by optimising some measure of fitness, such as the total …
Performance evaluation of dominance-based and indicator-based multiobjective approaches for phylogenetic inference
S Santander-Jiménez, MA Vega-Rodriguez - Information Sciences, 2016 - Elsevier
One of the main research lines in bioinformatics focuses on the optimization of biological
processes involving several objective functions. Due to the variety of multiobjective …
processes involving several objective functions. Due to the variety of multiobjective …
A GA for maximum likelihood phylogenetic inference using neighbour-joining as a genotype to phenotype mapping
L Poladian - Proceedings of the 7th annual conference on Genetic …, 2005 - dl.acm.org
Evolutionary relationships among species can be represented by a phylogenetic tree and
inferred by optimising some measure of fitness, such as the statistical likelihood of the tree …
inferred by optimising some measure of fitness, such as the statistical likelihood of the tree …
On the design of shared memory approaches to parallelize a multiobjective bee-inspired proposal for phylogenetic reconstruction
S Santander-Jimenez, MA Vega-Rodriguez - Information Sciences, 2015 - Elsevier
Current efforts in solving computationally demanding optimization problems in
bioinformatics rely on the combination of bioinspired computing and parallelism. The …
bioinformatics rely on the combination of bioinspired computing and parallelism. The …
[PDF][PDF] Evolutionary computation for the inference of natural evolutionary histories
GB Fogel - IEEE Connections, 2005 - Citeseer
The history of life on Earth can be estimated using molecular sequence and/or
morphological statistics of organ-isms. The inference of phylogenies is central to …
morphological statistics of organ-isms. The inference of phylogenies is central to …
A distance-based information preservation tree crossover for the maximum parsimony problem
Abstract The Maximum Parsimony problem aims at reconstructing a phylogenetic tree from
DNA sequences while minimizing the number of evolutionary changes. Known to be NP …
DNA sequences while minimizing the number of evolutionary changes. Known to be NP …
Heuristic methods for phylogenetic reconstruction with maximum parsimony
In this chapter, we explain how metaheuristics like local search, genetic, and memetic
algorithms are used for phylogenetic reconstruction using maximum parsimony. We review …
algorithms are used for phylogenetic reconstruction using maximum parsimony. We review …
Using mixed mode programming to parallelize an indicator-based evolutionary algorithm for inferring multiobjective phylogenetic histories
S Santander-Jiménez, MA Vega-Rodríguez - Soft Computing, 2017 - Springer
Multiple problems in bioinformatics research involve the optimization of time-consuming
objective functions over exponentially growing search spaces. The capabilities shown by …
objective functions over exponentially growing search spaces. The capabilities shown by …
Single-and multi-objective phylogenetic analysis of primate evolution using a genetic algorithm
V Jayaswal, L Poladian… - 2007 IEEE Congress on …, 2007 - ieeexplore.ieee.org
Starting with the protein-coding mitochondrial DNA sequences of 20 different species, we
reconstruct the primate evolutionary tree using maximum likelihood fitness functions based …
reconstruct the primate evolutionary tree using maximum likelihood fitness functions based …