Antimalarial drug resistance: a threat to malaria elimination

D Menard, A Dondorp - Cold Spring …, 2017 - perspectivesinmedicine.cshlp.org
Increasing antimalarial drug resistance once again threatens effective antimalarial drug
treatment, malaria control, and elimination. Artemisinin combination therapies (ACTs) are …

From molecules to populations: appreciating and estimating recombination rate variation

JV Peñalba, JBW Wolf - Nature Reviews Genetics, 2020 - nature.com
Recombination is a central biological process with implications for many areas in the life
sciences. Yet we are only beginning to appreciate variation in the recombination rate along …

iRSpot-EL: identify recombination spots with an ensemble learning approach

B Liu, S Wang, R Long, KC Chou - Bioinformatics, 2017 - academic.oup.com
Motivation Coexisting in a DNA system, meiosis and recombination are two indispensible
aspects for cell reproduction and growth. With the avalanche of genome sequences …

Indels, structural variation, and recombination drive genomic diversity in Plasmodium falciparum

A Miles, Z Iqbal, P Vauterin, R Pearson… - Genome …, 2016 - genome.cshlp.org
The malaria parasite Plasmodium falciparum has a great capacity for evolutionary
adaptation to evade host immunity and develop drug resistance. Current understanding of …

Evolution and genetic diversity of Theileria

T Sivakumar, K Hayashida, C Sugimoto… - Infection, Genetics and …, 2014 - Elsevier
Theileria parasites infect a wide range of domestic and wild ruminants worldwide, causing
diseases with varying degrees of severity. A broad classification, based on the parasite's …

PfSETvs methylation of histone H3K36 represses virulence genes in Plasmodium falciparum

L Jiang, J Mu, Q Zhang, T Ni, P Srinivasan, K Rayavara… - Nature, 2013 - nature.com
The variant antigen Plasmodium falciparum erythrocyte membrane protein 1 (PfEMP1),
which is expressed on the surface of P. falciparum-infected red blood cells, is a critical …

Evidence for widespread GC-biased gene conversion in eukaryotes

E Pessia, A Popa, S Mousset, C Rezvoy… - Genome biology and …, 2012 - academic.oup.com
GC-biased gene conversion (gBGC) is a process that tends to increase the GC content of
recombining DNA over evolutionary time and is thought to explain the evolution of GC …

Population genomic scan for candidate signatures of balancing selection to guide antigen characterization in malaria parasites

A Amambua-Ngwa, KKA Tetteh, M Manske… - PLoS …, 2012 - journals.plos.org
Acquired immunity in vertebrates maintains polymorphisms in endemic pathogens, leading
to identifiable signatures of balancing selection. To comprehensively survey for genes under …

Co-transmission of related malaria parasite lineages shapes within-host parasite diversity

SC Nkhoma, SG Trevino, KM Gorena, S Nair… - Cell host & …, 2020 - cell.com
In high-transmission regions, we expect parasite lineages within complex malaria infections
to be unrelated due to parasite inoculations from different mosquitoes. This project was …

DNA repair mechanisms and their biological roles in the malaria parasite Plasmodium falciparum

AH Lee, LS Symington, DA Fidock - Microbiology and Molecular …, 2014 - Am Soc Microbiol
Research into the complex genetic underpinnings of the malaria parasite Plasmodium
falciparum is entering a new era with the arrival of site-specific genome engineering …