Biological characteristics of energy conversion in carbon fixation by microalgae

J Zeng, Z Wang, G Chen - Renewable and Sustainable Energy Reviews, 2021 - Elsevier
CO 2-fixation by microalgae can be regarded as a biological process of energy conversion
with CO 2 and H 2 O in microalgae cells in the sunlight. The study of the biological intrinsic …

Network organization of the plant immune system: from pathogen perception to robust defense induction

F Delplace, C Huard‐Chauveau, R Berthomé… - The Plant …, 2022 - Wiley Online Library
The plant immune system has been explored essentially through the study of qualitative
resistance, a simple form of immunity, and from a reductionist point of view. The recent …

Sparking a sulfur war between plants and pathogens

W Wang, J Liu, B Mishra, MS Mukhtar… - Trends in Plant …, 2022 - cell.com
The biochemical versatility of sulfur (S) lends itself to myriad roles in plant–pathogen
interactions. This review evaluates the current understanding of mechanisms by which …

Protein–Protein Interaction Network Exploration Using Cytoscape

A Majeed, S Mukhtar - Protein-Protein Interactions: Methods and Protocols, 2023 - Springer
As the protein–protein interaction (PPI) data increase exponentially, the development and
usage of computational methods to analyze these datasets have become a new research …

[HTML][HTML] Ranking plant network nodes based on their centrality measures

N Kumar, MS Mukhtar - Entropy, 2023 - mdpi.com
Biological networks are often large and complex, making it difficult to accurately identify the
most important nodes. Node prioritization algorithms are used to identify the most influential …

[HTML][HTML] Genome wide study of cysteine rich receptor like proteins in Gossypium sp.

A Hussain, N Asif, AR Pirzada, A Noureen… - Scientific Reports, 2022 - nature.com
Cysteine-rich receptor-like-kinases (CRKs), a transmembrane subfamily of receptor-like
kinase, play crucial roles in plant adaptation. As such cotton is the major source of fiber for …

[HTML][HTML] The lost and found: unraveling the functions of orphan genes

AZ Fakhar, J Liu, KM Pajerowska-Mukhtar… - Journal of …, 2023 - mdpi.com
Orphan Genes (OGs) are a mysterious class of genes that have recently gained significant
attention. Despite lacking a clear evolutionary history, they are found in nearly all living …

[HTML][HTML] Overview of methods for characterization and visualization of a protein–protein interaction network in a multi-omics integration context

V Robin, A Bodein, MP Scott-Boyer… - Frontiers in Molecular …, 2022 - frontiersin.org
At the heart of the cellular machinery through the regulation of cellular functions, protein–
protein interactions (PPIs) have a significant role. PPIs can be analyzed with network …

[HTML][HTML] A rice protein interaction network reveals high centrality nodes and candidate pathogen effector targets

B Mishra, N Kumar, MS Mukhtar - Computational and Structural …, 2022 - Elsevier
Network science identifies key players in diverse biological systems including host-
pathogen interactions. We demonstrated a scale-free network property for a comprehensive …

Integrated Metabolo-transcriptomics Reveals the Defense Response of Homogentisic Acid in Wheat against Puccinia striiformis f. sp. tritici

S Liu, L Xie, J Su, B Tian, A Fang, Y Yu… - Journal of Agricultural …, 2022 - ACS Publications
Stripe rust is a widespread and harmful wheat disease caused by Puccinia striiformis f. sp.
tritici (Pst) worldwide. Targeted metabolome and transcriptomics analyses of CYR23 …