[HTML][HTML] Applying the digital data and the bioinformatics tools in SARS-CoV-2 research

M Tan, J Xia, H Luo, G Meng, Z Zhu - Computational and Structural …, 2023 - Elsevier
Bioinformatics has been playing a crucial role in the scientific progress to fight against the
pandemic of the coronavirus disease 2019 (COVID-19) caused by the severe acute …

A first computational frame for recognizing heparin-binding protein

W Zhu, SS Yuan, J Li, CB Huang, H Lin, B Liao - Diagnostics, 2023 - mdpi.com
Heparin-binding protein (HBP) is a cationic antibacterial protein derived from multinuclear
neutrophils and an important biomarker of infectious diseases. The correct identification of …

The 2022 Nucleic Acids Research database issue and the online molecular biology database collection

DJ Rigden, XM Fernández - Nucleic acids research, 2022 - academic.oup.com
Abstract The 2022 Nucleic Acids Research Database Issue contains 185 papers, including
87 papers reporting on new databases and 85 updates from resources previously published …

Bioinformatics research on drug sensitivity prediction

Y Chen, L Juan, X Lv, L Shi - Frontiers in pharmacology, 2021 - frontiersin.org
Modeling-based anti-cancer drug sensitivity prediction has been extensively studied in
recent years. While most drug sensitivity prediction models only use gene expression data …

TEDD: a database of temporal gene expression patterns during multiple developmental periods in human and model organisms

Z Zhou, C Tan, MHK Chau, X Jiang, Z Ke… - Nucleic Acids …, 2023 - academic.oup.com
Abstract Characterization of the specific expression and chromatin profiles of genes enables
understanding how they contribute to tissue/organ development and the mechanisms …

De Novo design of potential inhibitors against SARS-CoV-2 Mpro

S Li, L Wang, J Meng, Q Zhao, L Zhang, H Liu - Computers in Biology and …, 2022 - Elsevier
The impact of the ravages of COVID-19 on people's lives is obvious, and the development of
novel potential inhibitors against SARS-CoV-2 main protease (Mpro), which has been …

COVIDpro: Database for mining protein dysregulation in patients with COVID-19

F Zhang, A Luna, T Tan, Y Chen… - Journal of Proteome …, 2023 - ACS Publications
The ongoing pandemic of the coronavirus disease 2019 (COVID-19) caused by the severe
acute respiratory syndrome coronavirus 2 still has limited treatment options. Our …

The landscape of differential splicing and transcript alternations in severe COVID‐19 infection

SB Mukherjee, S Mukherjee, R Detroja… - The FEBS …, 2023 - Wiley Online Library
Viral infections can modulate the widespread alternations of cellular splicing, favouring viral
replication within the host cells by overcoming host immune responses. However, how …

Host and microbiome features of secondary infections in lethal covid-19

M Zacharias, K Kashofer, P Wurm, P Regitnig… - IScience, 2022 - cell.com
Secondary infections contribute significantly to covid-19 mortality but driving factors remain
poorly understood. Autopsies of 20 covid-19 cases and 14 controls from the first pandemic …

[HTML][HTML] Prediction of lung cancer metastasis by gene expression

N Cheng, J Liu, C Chen, T Zheng, C Li… - Computers in Biology and …, 2023 - Elsevier
Tumor metastasis is the main cause of death in cancer patients. Early prediction of tumor
metastasis can allow for timely intervention. At present, research on tumor metastasis mainly …