Harmonizing taxon names in biodiversity data: A review of tools, databases and best practices
The process of standardizing taxon names, taxonomic name harmonization, is necessary to
properly merge data indexed by taxon names. The large variety of taxonomic databases and …
properly merge data indexed by taxon names. The large variety of taxonomic databases and …
Biodiversity at the global scale: the synthesis continues
RA Folk, CM Siniscalchi - American Journal of Botany, 2021 - Wiley Online Library
Traditionally, the generation and use of biodiversity data and their associated specimen
objects have been primarily the purview of individuals and small research groups. While …
objects have been primarily the purview of individuals and small research groups. While …
Validating taxonomic identifications in entomological research
We surveyed the treatment of taxonomic information in 567 papers published in nine
entomological journals in 2016. The proportion of papers that provide taxonomic data in …
entomological journals in 2016. The proportion of papers that provide taxonomic data in …
Temporal degradation of data limits biodiversity research
Spatial and/or temporal biases in biodiversity data can directly influence the utility,
comparability, and reliability of ecological and evolutionary studies. While the effects of …
comparability, and reliability of ecological and evolutionary studies. While the effects of …
Cloud computing in a distributed e‐infrastructure using the web processing service standard
New Science paradigms have recently evolved to promote open publication of scientific
findings as well as multi‐disciplinary collaborative approaches to scientific experimentation …
findings as well as multi‐disciplinary collaborative approaches to scientific experimentation …
[HTML][HTML] COPIOUS: A gold standard corpus of named entities towards extracting species occurrence from biodiversity literature
Background Species occurrence records are very important in the biodiversity domain.
While several available corpora contain only annotations of species names or habitats and …
While several available corpora contain only annotations of species names or habitats and …
[HTML][HTML] Challenges with using names to link digital biodiversity information
D Patterson, D Mozzherin, DP Shorthouse… - Biodiversity data …, 2016 - ncbi.nlm.nih.gov
The need for a names-based cyber-infrastructure for digital biology is based on the
argument that scientific names serve as a standardized metadata system that has been used …
argument that scientific names serve as a standardized metadata system that has been used …
Constructing a biodiversity terminological inventory
The increasing growth of literature in biodiversity presents challenges to users who need to
discover pertinent information in an efficient and timely manner. In response, text mining …
discover pertinent information in an efficient and timely manner. In response, text mining …
“gnparser”: a powerful parser for scientific names based on Parsing Expression Grammar
DY Mozzherin, AA Myltsev, DJ Patterson - BMC bioinformatics, 2017 - Springer
Background Scientific names in biology act as universal links. They allow us to cross-
reference information about organisms globally. However variations in spelling of scientific …
reference information about organisms globally. However variations in spelling of scientific …
A standardized reference data set for vertebrate taxon name resolution
PF Zermoglio, RP Guralnick, JR Wieczorek - PLoS One, 2016 - journals.plos.org
Taxonomic names associated with digitized biocollections labels have flooded into
repositories such as GBIF, iDigBio and VertNet. The names on these labels are often …
repositories such as GBIF, iDigBio and VertNet. The names on these labels are often …