Transposable elements and the epigenetic regulation of the genome

RK Slotkin, R Martienssen - Nature reviews genetics, 2007 - nature.com
Overlapping epigenetic mechanisms have evolved in eukaryotic cells to silence the
expression and mobility of transposable elements (TEs). Owing to their ability to recruit the …

Comprehensive mechanism of gene silencing and its role in plant growth and development

AH El-Sappah, K Yan, Q Huang, MM Islam… - Frontiers in Plant …, 2021 - frontiersin.org
Gene silencing is a negative feedback mechanism that regulates gene expression to define
cell fate and also regulates metabolism and gene expression throughout the life of an …

Genome-Wide Profiling and Analysis of Arabidopsis siRNAs

KD Kasschau, N Fahlgren, EJ Chapman… - PLoS …, 2007 - journals.plos.org
Eukaryotes contain a diversified set of small RNA-guided pathways that control genes,
repeated sequences, and viruses at the transcriptional and posttranscriptional levels …

Epigenetic silencing in transgenic plants

S Rajeevkumar, P Anunanthini… - Frontiers in plant …, 2015 - frontiersin.org
Epigenetic silencing is a natural phenomenon in which the expression of genes is regulated
through modifications of DNA, RNA, or histone proteins. It is a mechanism for defending host …

Genetic perturbation of the maize methylome

Q Li, SR Eichten, PJ Hermanson… - The Plant …, 2014 - academic.oup.com
DNA methylation can play important roles in the regulation of transposable elements and
genes. A collection of mutant alleles for 11 maize (Zea mays) genes predicted to play roles …

Paramutation: from maize to mice

VL Chandler - Cell, 2007 - cell.com
Paramutation: From Maize to Mice: Cell Skip to Main Content Advertisement Cell This
journal offers authors two options (open access or subscription) to publish research Submit …

Computational Identification and Functional Predictions of Long Noncoding RNA in Zea mays

S Boerner, KM McGinnis - 2012 - journals.plos.org
Background Computational analysis of cDNA sequences from multiple organisms suggests
that a large portion of transcribed DNA does not code for a functional protein. In mammals …

Exploring the secrets of long noncoding RNAs

M Quan, J Chen, D Zhang - International journal of molecular sciences, 2015 - mdpi.com
High-throughput sequencing has revealed that the majority of RNAs have no capacity to
encode protein. Among these non-coding transcripts, recent work has focused on the roles …

Distinct size distribution of endogenous siRNAs in maize: Evidence from deep sequencing in the mop1-1 mutant

K Nobuta, C Lu, R Shrivastava… - Proceedings of the …, 2008 - National Acad Sciences
Small RNAs from plants are known to be highly complex and abundant, with this complexity
proportional to genome size. Most endogenous siRNAs in Arabidopsis are dependent on …

Identification and characterization of Dicer-like, Argonaute and RNA-dependent RNA polymerase gene families in maize

Y Qian, Y Cheng, X Cheng, H Jiang, S Zhu, B Cheng - Plant cell reports, 2011 - Springer
Eukaryotic gene expression is regulated at least by two processes, RNA interference at the
post-transcriptional level and chromatin modification at the transcriptional level. Distinct …