[HTML][HTML] Defining interactions between the genome, epigenome, and the environment in inflammatory bowel disease: progress and prospects

AJ Noble, JK Nowak, AT Adams, HH Uhlig, J Satsangi - Gastroenterology, 2023 - Elsevier
Recent advances in our understanding of the pathogenesis of inflammatory bowel disease
(IBD) have highlighted the complex interplay between the genome, the epigenome, and the …

[HTML][HTML] The individuality paradigm: Automated longitudinal activity tracking of large cohorts of genetically identical mice in an enriched environment

G Kempermann, JB Lopes, S Zocher, S Schilling… - Neurobiology of …, 2022 - Elsevier
Personalized medicine intensifies interest in experimental paradigms that delineate sources
of phenotypic variation. The paradigm of environmental enrichment allows for comparisons …

Partitioned polygenic risk scores identify distinct types of metabolic dysfunction-associated steatotic liver disease

O Jamialahmadi, A De Vincentis, F Tavaglione… - Nature medicine, 2024 - nature.com
Metabolic dysfunction-associated steatotic liver disease (MASLD) is characterized by an
excess of lipids, mainly triglycerides, in the liver and components of the metabolic syndrome …

Variance-quantitative trait loci enable systematic discovery of gene-environment interactions for cardiometabolic serum biomarkers

KE Westerman, TD Majarian, F Giulianini… - Nature …, 2022 - nature.com
Gene-environment interactions represent the modification of genetic effects by
environmental exposures and are critical for understanding disease and informing …

[HTML][HTML] eQTL studies: from bulk tissues to single cells

J Zhang, H Zhao - Journal of Genetics and Genomics, 2023 - Elsevier
An expression quantitative trait locus (eQTL) is a chromosomal region where genetic
variants are associated with the expression levels of specific genes that can be both nearby …

Education interacts with genetic variants near GJD2, RBFOX1, LAMA2, KCNQ5 and LRRC4C to confer susceptibility to myopia

R Clark, A Pozarickij, PG Hysi, K Ohno-Matsui… - PLoS …, 2022 - journals.plos.org
Myopia most often develops during school age, with the highest incidence in countries with
intensive education systems. Interactions between genetic variants and educational …

Parent-of-Origin inference for biobanks

RJ Hofmeister, S Rubinacci, DM Ribeiro, A Buil… - Nature …, 2022 - nature.com
Identical genetic variations can have different phenotypic effects depending on their parent
of origin. Yet, studies focusing on parent-of-origin effects have been limited in terms of …

Modeling interaction and dispersion effects in the analysis of gene-by-environment interaction

BW Domingue, K Kanopka, TT Mallard, S Trejo… - Behavior Genetics, 2022 - Springer
Genotype-by-environment interaction (GxE) studies probe heterogeneity in response to risk
factors or interventions. Popular methods for estimation of GxE examine multiplicative …

Genotype× environment interactions in gene regulation and complex traits

C Boye, S Nirmalan, A Ranjbaran, F Luca - Nature Genetics, 2024 - nature.com
Genotype× environment interactions (GxE) have long been recognized as a key mechanism
underlying human phenotypic variation. Technological developments over the past 15 years …

Appraisal of gene-environment interactions in GWAS for evidence-based precision nutrition implementation

R San-Cristobal, J de Toro-Martín, MC Vohl - Current Nutrition Reports, 2022 - Springer
Abstract Purpose of Review This review aims to analyse the currently reported gene-
environment (G× E) interactions in genome-wide association studies (GWAS), involving …