Cancer proteogenomics: current impact and future prospects

DR Mani, K Krug, B Zhang, S Satpathy… - Nature Reviews …, 2022 - nature.com
Genomic analyses in cancer have been enormously impactful, leading to the identification of
driver mutations and development of targeted therapies. But the functions of the vast majority …

[HTML][HTML] Multi-omics approaches in cancer research with applications in tumor subtyping, prognosis, and diagnosis

O Menyhárt, B Győrffy - Computational and structural biotechnology journal, 2021 - Elsevier
While cost-effective high-throughput technologies provide an increasing amount of data, the
analyses of single layers of data seldom provide causal relations. Multi-omics data …

[HTML][HTML] A proteogenomic portrait of lung squamous cell carcinoma

S Satpathy, K Krug, PMJ Beltran, SR Savage, F Petralia… - Cell, 2021 - cell.com
Lung squamous cell carcinoma (LSCC) remains a leading cause of cancer death with few
therapeutic options. We characterized the proteogenomic landscape of LSCC, providing a …

[HTML][HTML] Proteogenomic characterization reveals therapeutic vulnerabilities in lung adenocarcinoma

MA Gillette, S Satpathy, S Cao, SM Dhanasekaran… - Cell, 2020 - cell.com
To explore the biology of lung adenocarcinoma (LUAD) and identify new therapeutic
opportunities, we performed comprehensive proteogenomic characterization of 110 tumors …

[HTML][HTML] The next horizon in precision oncology: Proteogenomics to inform cancer diagnosis and treatment

H Rodriguez, JC Zenklusen, LM Staudt, JH Doroshow… - Cell, 2021 - cell.com
When it comes to precision oncology, proteogenomics may provide better prospects to the
clinical characterization of tumors, help make a more accurate diagnosis of cancer, and …

[HTML][HTML] Proteomic analysis of archival breast cancer clinical specimens identifies biological subtypes with distinct survival outcomes

K Asleh, GL Negri, SE Spencer Miko… - Nature …, 2022 - nature.com
Despite advances in genomic classification of breast cancer, current clinical tests and
treatment decisions are commonly based on protein level information. Formalin-fixed …

[HTML][HTML] Proteogenomic landscape of breast cancer tumorigenesis and targeted therapy

K Krug, EJ Jaehnig, S Satpathy, L Blumenberg… - Cell, 2020 - cell.com
The integration of mass spectrometry-based proteomics with next-generation DNA and RNA
sequencing profiles tumors more comprehensively. Here this" proteogenomics" approach …

Proteogenomic markers of chemotherapy resistance and response in triple-negative breast cancer

M Anurag, EJ Jaehnig, K Krug, JT Lei, EJ Bergstrom… - Cancer discovery, 2022 - AACR
Microscaled proteogenomics was deployed to probe the molecular basis for differential
response to neoadjuvant carboplatin and docetaxel combination chemotherapy for triple …

[HTML][HTML] Breast cancer: a molecularly heterogenous disease needing subtype-specific treatments

U Testa, G Castelli, E Pelosi - Medical Sciences, 2020 - mdpi.com
Breast cancer is the most commonly occurring cancer in women. There were over two-
million new cases in world in 2018. It is the second leading cause of death from cancer in …

Proteogenomic characterization of small cell lung cancer identifies biological insights and subtype-specific therapeutic strategies

Q Liu, J Zhang, C Guo, M Wang, C Wang, Y Yan, L Sun… - Cell, 2024 - cell.com
We performed comprehensive proteogenomic characterization of small cell lung cancer
(SCLC) using paired tumors and adjacent lung tissues from 112 treatment-naive patients …