RTX-KG2: a system for building a semantically standardized knowledge graph for translational biomedicine
Background Biomedical translational science is increasingly using computational reasoning
on repositories of structured knowledge (such as UMLS, SemMedDB, ChEMBL, Reactome …
on repositories of structured knowledge (such as UMLS, SemMedDB, ChEMBL, Reactome …
BioGraph: a web application and a graph database for querying and analyzing bioinformatics resources
Background Several online databases provide a large amount of biomedical data of different
biological entities. These resources are typically stored in systems implementing their own …
biological entities. These resources are typically stored in systems implementing their own …
GeCoAgent: a conversational agent for empowering genomic data extraction and analysis
With the availability of reliable and low-cost DNA sequencing, human genomics is relevant
to a growing number of end-users, including biologists and clinicians. Typical interactions …
to a growing number of end-users, including biologists and clinicians. Typical interactions …
BioGrakn: a knowledge graph-based semantic database for biomedical sciences
The proliferation of biological research data generated and shared openly online is of huge
benefit to the scientific community, but there are often significant challenges to overcome …
benefit to the scientific community, but there are often significant challenges to overcome …
Arena-Idb: a platform to build human non-coding RNA interaction networks
Background High throughput technologies have provided the scientific community an
unprecedented opportunity for large-scale analysis of genomes. Non-coding RNAs …
unprecedented opportunity for large-scale analysis of genomes. Non-coding RNAs …
Biographbot: a conversational assistant for bioinformatics graph databases
Chatbots technology allows to easily add a conversational interface to a large set of
applications. In this paper, we show a conversational agent based on ALICE framework …
applications. In this paper, we show a conversational agent based on ALICE framework …
Integrated DB for bioinformatics: a case study on analysis of functional effect of MiRNA SNPs in cancer
The era of “big data” arose the need to have computational tools in support of biological
tasks. Many types of bioinformatics tools have been developed for different biological tasks …
tasks. Many types of bioinformatics tools have been developed for different biological tasks …
A performance evaluation of NoSQL databases to manage proteomics data
C Messaoudi, R Fissoune… - International Journal of …, 2018 - inderscienceonline.com
NoSQL databases have recently been introduced as alternatives to traditional relational
database management systems because of their capabilities in terms of storing data and …
database management systems because of their capabilities in terms of storing data and …
Construction and visualization of dynamic biological networks: benchmarking the Neo4j graph database
L Wiese, C Wangmo, L Steuernagel, AO Schmitt… - Data Integration in the …, 2019 - Springer
Genome analysis is a major precondition for future advances in the life sciences. The
complex organization of genome data and the interactions between genomic components …
complex organization of genome data and the interactions between genomic components …
A terpenoid metabolic network modelled as graph database
WMCD Silva, DJ Vilar, DDS Souza… - … Journal of Data …, 2017 - inderscienceonline.com
Terpenoids are involved in interactions such as signalling for communication intra/inter
species, signalling molecules to attract pollinating insects, and defence against herbivores …
species, signalling molecules to attract pollinating insects, and defence against herbivores …