Microbial production of advanced biofuels
Concerns over climate change have necessitated a rethinking of our transportation
infrastructure. One possible alternative to carbon-polluting fossil fuels is biofuels produced …
infrastructure. One possible alternative to carbon-polluting fossil fuels is biofuels produced …
Machine learning for metabolic engineering: A review
Abstract Machine learning provides researchers a unique opportunity to make metabolic
engineering more predictable. In this review, we offer an introduction to this discipline in …
engineering more predictable. In this review, we offer an introduction to this discipline in …
What can ribo-seq, immunopeptidomics, and proteomics tell us about the noncanonical proteome?
Abstract Ribosome profiling (Ribo-Seq) has proven transformative for our understanding of
the human genome and proteome by illuminating thousands of noncanonical sites of …
the human genome and proteome by illuminating thousands of noncanonical sites of …
Recent advances in machine learning applications in metabolic engineering
Metabolic engineering encompasses several widely-used strategies, which currently hold a
high seat in the field of biotechnology when its potential is manifesting through a plethora of …
high seat in the field of biotechnology when its potential is manifesting through a plethora of …
Machine learning applications in systems metabolic engineering
Highlights•Application of machine learning in biotechnology is becoming essential.•Machine
learning is increasingly applied to advance systems metabolic engineering.•Machine …
learning is increasingly applied to advance systems metabolic engineering.•Machine …
Uncovering the small proteome of Methanosarcina mazei using Ribo-seq and peptidomics under different nitrogen conditions
MA Tufail, B Jordan, L Hadjeras, R Gelhausen… - Nature …, 2024 - nature.com
The mesophilic methanogenic archaeal model organism Methanosarcina mazei strain Gö1
is crucial for climate and environmental research due to its ability to produce methane. Here …
is crucial for climate and environmental research due to its ability to produce methane. Here …
[HTML][HTML] Thousands of small, novel genes predicted in global phage genomes
Summary Small genes (< 150 nucleotides) have been systematically overlooked in phage
genomes. We employ a large-scale comparative genomics approach to predict> 40,000 …
genomes. We employ a large-scale comparative genomics approach to predict> 40,000 …
[HTML][HTML] A Comprehensive Review of Bioinformatics Tools for Genomic Biomarker Discovery Driving Precision Oncology
AJ Clark, JW Lillard Jr - Genes, 2024 - mdpi.com
The rapid advancement of high-throughput technologies, particularly next-generation
sequencing (NGS), has revolutionized cancer research by enabling the investigation of …
sequencing (NGS), has revolutionized cancer research by enabling the investigation of …
Identifying small open reading frames in prokaryotes with ribosome profiling
Small proteins encoded by open reading frames (ORFs) shorter than 50 codons (small
ORFs [sORFs]) are often overlooked by annotation engines and are difficult to characterize …
ORFs [sORFs]) are often overlooked by annotation engines and are difficult to characterize …
A journey with psychedelic mushrooms: From historical relevance to biology, cultivation, medicinal uses, biotechnology, and beyond
Psychedelic mushrooms containing psilocybin and related tryptamines have long been used
for ethnomycological purposes, but emerging evidence points to the potential therapeutic …
for ethnomycological purposes, but emerging evidence points to the potential therapeutic …