A review on machine learning principles for multi-view biological data integration

Y Li, FX Wu, A Ngom - Briefings in bioinformatics, 2018 - academic.oup.com
Driven by high-throughput sequencing techniques, modern genomic and clinical studies are
in a strong need of integrative machine learning models for better use of vast volumes of …

Metaheuristic Biclustering Algorithms: From State-of-the-Art to Future Opportunities

A José-García, J Jacques, V Sobanski… - ACM Computing …, 2023 - dl.acm.org
Biclustering is an unsupervised machine-learning technique that simultaneously clusters
rows and columns in a data matrix. Over the past two decades, the field of biclustering has …

Population-level analysis of gut microbiome variation

G Falony, M Joossens, S Vieira-Silva, J Wang, Y Darzi… - Science, 2016 - science.org
Fecal microbiome variation in the average, healthy population has remained under-
investigated. Here, we analyzed two independent, extensively phenotyped cohorts: the …

A comprehensive evaluation of module detection methods for gene expression data

W Saelens, R Cannoodt, Y Saeys - Nature communications, 2018 - nature.com
A critical step in the analysis of large genome-wide gene expression datasets is the use of
module detection methods to group genes into co-expression modules. Because of …

A comparative analysis of biclustering algorithms for gene expression data

K Eren, M Deveci, O Küçüktunç… - Briefings in …, 2013 - academic.oup.com
The need to analyze high-dimension biological data is driving the development of new data
mining methods. Biclustering algorithms have been successfully applied to gene expression …

A systematic comparative evaluation of biclustering techniques

VA Padilha, RJGB Campello - BMC bioinformatics, 2017 - Springer
Background Biclustering techniques are capable of simultaneously clustering rows and
columns of a data matrix. These techniques became very popular for the analysis of gene …

Biclustering methods: biological relevance and application in gene expression analysis

A Oghabian, S Kilpinen, S Hautaniemi, E Czeizler - PloS one, 2014 - journals.plos.org
DNA microarray technologies are used extensively to profile the expression levels of
thousands of genes under various conditions, yielding extremely large data-matrices. Thus …

Biclustering fMRI time series: a comparative study

EN Castanho, H Aidos, SC Madeira - BMC bioinformatics, 2022 - Springer
Background The effectiveness of biclustering, simultaneous clustering of rows and columns
in a data matrix, was shown in gene expression data analysis. Several researchers …

It is time to apply biclustering: a comprehensive review of biclustering applications in biological and biomedical data

J Xie, A Ma, A Fennell, Q Ma, J Zhao - Briefings in bioinformatics, 2019 - academic.oup.com
Biclustering is a powerful data mining technique that allows clustering of rows and columns,
simultaneously, in a matrix-format data set. It was first applied to gene expression data in …

QUBIC2: a novel and robust biclustering algorithm for analyses and interpretation of large-scale RNA-Seq data

J Xie, A Ma, Y Zhang, B Liu, S Cao, C Wang, J Xu… - …, 2020 - academic.oup.com
Motivation The biclustering of large-scale gene expression data holds promising potential
for detecting condition-specific functional gene modules (ie biclusters). However, existing …