Intragenomic rDNA variation-the product of concerted evolution, mutation, or something in between?

W Wang, X Zhang, S Garcia, AR Leitch, A Kovařík - Heredity, 2023 - nature.com
The classical model of concerted evolution states that hundreds to thousands of ribosomal
DNA (rDNA) units undergo homogenization, making the multiple copies of the individual …

First discovered, long out of sight, finally visible: ribosomal DNA

AN Hall, E Morton, C Queitsch - Trends in Genetics, 2022 - cell.com
With the advent of long-read sequencing, previously unresolvable genomic elements are
being revisited in an effort to generate fully complete reference genomes. One such element …

Evolutionary trends in animal ribosomal DNA loci: introduction to a new online database

J Sochorová, S Garcia, F Gálvez, R Symonová… - Chromosoma, 2018 - Springer
Ribosomal DNA (rDNA) loci encoding 5S and 45S (18S-5.8 S-28S) rRNAs are important
components of eukaryotic chromosomes. Here, we set up the animal rDNA database …

B-chrom: a database on B-chromosomes of plants, animals and fungi

U D'Ambrosio, MP Alonso-Lifante, K Barros, A Kovařík… - New Phytologist, 2017 - JSTOR
We present here B-chrom (www. bchrom. csic. es), an online database with comprehensive
information on B chromosomes (Bs) for plants, animals and fungi. Data have been extracted …

The dynamic interplay between ribosomal DNA and transposable elements: a perspective from genomics and cytogenetics

S Garcia, A Kovarik, S Maiwald, L Mann… - Molecular Biology …, 2024 - academic.oup.com
Although both are salient features of genomes, at first glance ribosomal DNAs and
transposable elements are genetic elements with not much in common: whereas ribosomal …

Adding color to a century‐old enigma: multi‐color chromosome identification unravels the autotriploid nature of saffron (Crocus sativus) as a hybrid of wild Crocus …

T Schmidt, T Heitkam, S Liedtke, V Schubert… - New …, 2019 - Wiley Online Library
Saffron crocus (Crocus sativus) is the source of the most expensive spice of the world,
produced from manually harvested stigmas, thus serving as a cash crop for rural …

Ancient Origin of Two 5S rDNA Families Dominating in the Genus Rosa and Their Behavior in the Canina-Type Meiosis

R Vozárová, V Herklotz, A Kovařík… - Frontiers in Plant …, 2021 - frontiersin.org
The genus Rosa comprises more than 100 woody species characterized by intensive
hybridization, introgression, and an overall complex evolutionary history. Besides many …

The rDNA loci—intersections of replication, transcription, and repair pathways

I Goffová, J Fajkus - International Journal of Molecular Sciences, 2021 - mdpi.com
Genes encoding ribosomal RNA (rDNA) are essential for cell survival and are particularly
sensitive to factors leading to genomic instability. Their repetitive character makes them …

The utility of graph clustering of 5S ribosomal DNA homoeologs in plant allopolyploids, homoploid hybrids, and cryptic introgressants

S Garcia, JF Wendel, N Borowska-Zuchowska… - Frontiers in Plant …, 2020 - frontiersin.org
Introduction Ribosomal DNA (rDNA) loci have been widely used for identification of
allopolyploids and hybrids, although few of these studies employed high-throughput …

Cyto-molecular characterization of rDNA and chromatin composition in the NOR-associated satellite in Chestnut (Castanea spp.)

N Islam-Faridi, GL Hodnett, T Zhebentyayeva… - Scientific reports, 2024 - nature.com
Abstract The American chestnut (Castanea dentata, 2 n= 2 x= 24), once known as the “King
of the Appalachian Forest”, was decimated by chestnut blight during the first half of the …