Leveraging supervised learning for functionally informed fine-mapping of cis-eQTLs identifies an additional 20,913 putative causal eQTLs

QS Wang, DR Kelley, J Ulirsch, M Kanai… - Nature …, 2021 - nature.com
The large majority of variants identified by GWAS are non-coding, motivating detailed
characterization of the function of non-coding variants. Experimental methods to assess …

[HTML][HTML] A cis-regulatory element regulates ERAP2 expression through autoimmune disease risk SNPs

WJ Venema, S Hiddingh, J van Loosdregt, J Bowes… - Cell genomics, 2024 - cell.com
Single-nucleotide polymorphisms (SNPs) near the ERAP2 gene are associated with various
autoimmune conditions, as well as protection against lethal infections. Due to high linkage …

[HTML][HTML] Association between lipid-lowering drugs and allergic diseases: A Mendelian randomization study

Y Xu, Y Li - World Allergy Organization Journal, 2024 - Elsevier
Background Several observational studies suggest a possible link between lipid-lowering
drugs and allergic diseases. However, inferring causality from these studies can be …

[HTML][HTML] Analyses of allele age and fitness impact reveal human beneficial alleles to be older than neutral controls

AM Pivirotto, A Platt, R Patel, S Kumar, J Hey - bioRxiv, 2023 - ncbi.nlm.nih.gov
A classic population genetic prediction is that alleles experiencing directional selection
should swiftly traverse allele frequency space, leaving detectable reductions in genetic …

Analyses of allele age and fitness impact reveal human beneficial alleles to be older than neutral controls

AM Pivirotto, A Platt, R Patel, S Kumar, J Hey - bioRxiv, 2023 - biorxiv.org
A classic population genetic prediction is that alleles experiencing directional selection
should swiftly traverse allele frequency space, leaving detectable reductions in genetic …

Dynamics of Natural Selection on Human Genomic Variants

AM Pivirotto - 2024 - search.proquest.com
Evolutionary adaptation in humans is shaped primarily by the selection of beneficial alleles.
Classical population genetic theory predicts that alleles under selection will experience a …

Computational methods for the analysis of genomic data and biological processes

F Gómez-Vela, F Divina, M García-Torres - Genes, 2020 - mdpi.com
Today, new technologies, such as microarrays or high-performance sequencing, are
producing more and more genomic data. This fact has brought new opportunities and …

A highly efficient gene disruption strategy reveals lipid co-regulatory networks

T Harayama, T Hashidate-Yoshida, L Fleuriot… - bioRxiv, 2020 - biorxiv.org
Gene disruption has been drastically facilitated by recent genome editing tools. While the
efficiency of gene disruption in cell culture has improved, clone isolation remains routinely …