Atomic-level design of metalloenzyme-like active pockets in metal–organic frameworks for bioinspired catalysis
Natural metalloenzymes with astonishing reaction activity and specificity underpin essential
life transformations. Nevertheless, enzymes only operate under mild conditions to keep …
life transformations. Nevertheless, enzymes only operate under mild conditions to keep …
Protein ensembles: how does nature harness thermodynamic fluctuations for life? The diverse functional roles of conformational ensembles in the cell
All soluble proteins populate conformational ensembles that together constitute the native
state. Their fluctuations in water are intrinsic thermodynamic phenomena, and the …
state. Their fluctuations in water are intrinsic thermodynamic phenomena, and the …
Automated design of efficient and functionally diverse enzyme repertoires
O Khersonsky, R Lipsh, Z Avizemer, Y Ashani… - Molecular cell, 2018 - cell.com
Substantial improvements in enzyme activity demand multiple mutations at spatially
proximal positions in the active site. Such mutations, however, often exhibit unpredictable …
proximal positions in the active site. Such mutations, however, often exhibit unpredictable …
The role of protein dynamics in the evolution of new enzyme function
E Campbell, M Kaltenbach, GJ Correy, PD Carr… - Nature chemical …, 2016 - nature.com
Enzymes must be ordered to allow the stabilization of transition states by their active sites,
yet dynamic enough to adopt alternative conformations suited to other steps in their catalytic …
yet dynamic enough to adopt alternative conformations suited to other steps in their catalytic …
Comparing proteins by their internal dynamics: Exploring structure–function relationships beyond static structural alignments
C Micheletti - Physics of life reviews, 2013 - Elsevier
The growing interest for comparing protein internal dynamics owes much to the realisation
that protein function can be accompanied or assisted by structural fluctuations and …
that protein function can be accompanied or assisted by structural fluctuations and …
From protein engineering to immobilization: promising strategies for the upgrade of industrial enzymes
Enzymes found in nature have been exploited in industry due to their inherent catalytic
properties in complex chemical processes under mild experimental and environmental …
properties in complex chemical processes under mild experimental and environmental …
Conformational dynamics and enzyme evolution
D Petrović, VA Risso, SCL Kamerlin… - Journal of the …, 2018 - royalsocietypublishing.org
Enzymes are dynamic entities, and their dynamic properties are clearly linked to their
biological function. It follows that dynamics ought to play an essential role in enzyme …
biological function. It follows that dynamics ought to play an essential role in enzyme …
The universality of enzymatic rate–temperature dependency
Organismal adaptation to extreme temperatures yields enzymes with distinct configurational
stabilities, including thermophilic and psychrophilic enzymes, which are adapted to high and …
stabilities, including thermophilic and psychrophilic enzymes, which are adapted to high and …
Diminishing returns and tradeoffs constrain the laboratory optimization of an enzyme
N Tokuriki, CJ Jackson, L Afriat-Jurnou… - Nature …, 2012 - nature.com
Optimization processes, such as evolution, are constrained by diminishing returns—the
closer the optimum, the smaller the benefit per mutation, and by tradeoffs—improvement of …
closer the optimum, the smaller the benefit per mutation, and by tradeoffs—improvement of …
Pervasive cooperative mutational effects on multiple catalytic enzyme traits emerge via long-range conformational dynamics
Multidimensional fitness landscapes provide insights into the molecular basis of laboratory
and natural evolution. To date, such efforts usually focus on limited protein families and a …
and natural evolution. To date, such efforts usually focus on limited protein families and a …