[HTML][HTML] Implementing tumor mutational burden (TMB) analysis in routine diagnostics—a primer for molecular pathologists and clinicians

M Allgäuer, J Budczies, P Christopoulos… - … lung cancer research, 2018 - ncbi.nlm.nih.gov
Tumor mutational burden (TMB) is a new biomarker for prediction of response to PD-(L) 1
treatment. Comprehensive sequencing approaches (ie, whole exome and whole genome …

Exome sequencing: current and future perspectives

A Warr, C Robert, D Hume, A Archibald… - G3: Genes …, 2015 - academic.oup.com
The completion of a reference genome sequence for humans took more than 200 scientists
more than a decade in a project that cost almost $3 billion to complete (International Human …

MitoFinder: Efficient automated large‐scale extraction of mitogenomic data in target enrichment phylogenomics

R Allio, A Schomaker‐Bastos… - Molecular ecology …, 2020 - Wiley Online Library
Thanks to the development of high‐throughput sequencing technologies, target enrichment
sequencing of nuclear ultraconserved DNA elements (UCEs) now allows routine inference …

Comprehensive rare variant analysis via whole-genome sequencing to determine the molecular pathology of inherited retinal disease

KJ Carss, G Arno, M Erwood, J Stephens… - The American Journal of …, 2017 - cell.com
Inherited retinal disease is a common cause of visual impairment and represents a highly
heterogeneous group of conditions. Here, we present findings from a cohort of 722 …

De novo variants in neurodevelopmental disorders with epilepsy

HO Heyne, T Singh, H Stamberger, R Abou Jamra… - Nature …, 2018 - nature.com
Epilepsy is a frequent feature of neurodevelopmental disorders (NDDs), but little is known
about genetic differences between NDDs with and without epilepsy. We analyzed de novo …

Evaluation of hybridization capture versus amplicon‐based methods for whole‐exome sequencing

E Samorodnitsky, BM Jewell, R Hagopian… - Human …, 2015 - Wiley Online Library
Next‐generation sequencing has aided characterization of genomic variation. While whole‐
genome sequencing may capture all possible mutations, whole‐exome sequencing remains …

Predicting DNA hybridization kinetics from sequence

JX Zhang, JZ Fang, W Duan, LR Wu, AW Zhang… - Nature …, 2018 - nature.com
Hybridization is a key molecular process in biology and biotechnology, but so far there is no
predictive model for accurately determining hybridization rate constants based on sequence …

Computational prediction and validation of tumor-associated neoantigens

V Roudko, B Greenbaum, N Bhardwaj - Frontiers in Immunology, 2020 - frontiersin.org
Tumor progression is typically accompanied by an accumulation of driver and passenger
somatic mutations. A handful of those mutations occur in protein coding genes which …

[HTML][HTML] Diagnostics based on nucleic acid sequence variant profiling: PCR, hybridization, and NGS approaches

D Khodakov, C Wang, DY Zhang - Advanced drug delivery reviews, 2016 - Elsevier
Nucleic acid sequence variations have been implicated in many diseases, and reliable
detection and quantitation of DNA/RNA biomarkers can inform effective therapeutic action …

Advances of mRNA vaccine in tumor: a maze of opportunities and challenges

Y Yuan, F Gao, Y Chang, Q Zhao, X He - Biomarker research, 2023 - Springer
High-frequency mutations in tumor genomes could be exploited as an asset for developing
tumor vaccines. In recent years, with the tremendous breakthrough in genomics, intelligence …