[HTML][HTML] Virulence Factors of Enteric Pathogenic Escherichia coli: A Review
Escherichia coli are remarkably versatile microorganisms and important members of the
normal intestinal microbiota of humans and animals. This harmless commensal organism …
normal intestinal microbiota of humans and animals. This harmless commensal organism …
[HTML][HTML] Clinical metagenomics
CY Chiu, SA Miller - Nature Reviews Genetics, 2019 - nature.com
Clinical metagenomic next-generation sequencing (mNGS), the comprehensive analysis of
microbial and host genetic material (DNA and RNA) in samples from patients, is rapidly …
microbial and host genetic material (DNA and RNA) in samples from patients, is rapidly …
Clinical metagenomic next-generation sequencing for pathogen detection
Nearly all infectious agents contain DNA or RNA genomes, making sequencing an attractive
approach for pathogen detection. The cost of high-throughput or next-generation …
approach for pathogen detection. The cost of high-throughput or next-generation …
Implant infections: adhesion, biofilm formation and immune evasion
CR Arciola, D Campoccia, L Montanaro - Nature reviews microbiology, 2018 - nature.com
Medical device-associated infections account for a large proportion of hospital-acquired
infections. A variety of opportunistic pathogens can cause implant infections, depending on …
infections. A variety of opportunistic pathogens can cause implant infections, depending on …
Performance and application of 16S rRNA gene cycle sequencing for routine identification of bacteria in the clinical microbiology laboratory
DL Church, L Cerutti, A Gürtler, T Griener… - Clinical microbiology …, 2020 - Am Soc Microbiol
This review provides a state-of-the-art description of the performance of Sanger cycle
sequencing of the 16S rRNA gene for routine identification of bacteria in the clinical …
sequencing of the 16S rRNA gene for routine identification of bacteria in the clinical …
Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes
Advancement of DNA sequencing technology allows the routine use of genome sequences
in the various fields of microbiology. The information held in genome sequences proved to …
in the various fields of microbiology. The information held in genome sequences proved to …
Nanopore metagenomics enables rapid clinical diagnosis of bacterial lower respiratory infection
The gold standard for clinical diagnosis of bacterial lower respiratory infections (LRIs) is
culture, which has poor sensitivity and is too slow to guide early, targeted antimicrobial …
culture, which has poor sensitivity and is too slow to guide early, targeted antimicrobial …
[HTML][HTML] Dysbiosis of the gut and lung microbiome has a role in asthma
K Hufnagl, I Pali-Schöll, F Roth-Walter… - Seminars in …, 2020 - Springer
Worldwide 300 million children and adults are affected by asthma. The development of
asthma is influenced by environmental and other exogenous factors synergizing with …
asthma is influenced by environmental and other exogenous factors synergizing with …
A review of methods for the detection of pathogenic microorganisms
The testing and rapid detection of pathogenic organisms is a crucial protocol in the
prevention and identification of crises related to health, safety and wellbeing. Pathogen …
prevention and identification of crises related to health, safety and wellbeing. Pathogen …
[HTML][HTML] Towards a genomics-informed, real-time, global pathogen surveillance system
Abstract The recent Ebola and Zika epidemics demonstrate the need for the continuous
surveillance, rapid diagnosis and real-time tracking of emerging infectious diseases. Fast …
surveillance, rapid diagnosis and real-time tracking of emerging infectious diseases. Fast …