Transformer technology in molecular science
J Jiang, L Ke, L Chen, B Dou, Y Zhu… - Wiley …, 2024 - Wiley Online Library
A transformer is the foundational architecture behind large language models designed to
handle sequential data by using mechanisms of self‐attention to weigh the importance of …
handle sequential data by using mechanisms of self‐attention to weigh the importance of …
[HTML][HTML] Gotta be SAFE: a new framework for molecular design
Traditional molecular string representations, such as SMILES, often pose challenges for AI-
driven molecular design due to their non-sequential depiction of molecular substructures. To …
driven molecular design due to their non-sequential depiction of molecular substructures. To …
Application of Transformers in Cheminformatics
KD Luong, A Singh - Journal of Chemical Information and …, 2024 - ACS Publications
By accelerating time-consuming processes with high efficiency, computing has become an
essential part of many modern chemical pipelines. Machine learning is a class of computing …
essential part of many modern chemical pipelines. Machine learning is a class of computing …
SALSA: Semantically-Aware Latent Space Autoencoder
In deep learning for drug discovery, molecular representations are often based on
sequences, known as SMILES, which allow for straightforward implementation of natural …
sequences, known as SMILES, which allow for straightforward implementation of natural …
ChemSpaceAL: An efficient active learning methodology applied to protein-specific molecular generation
The incredible capabilities of generative artificial intelligence models have inevitably led to
their application in the domain of drug discovery. It is therefore of tremendous interest to …
their application in the domain of drug discovery. It is therefore of tremendous interest to …
Composition based oxidation state prediction of materials using deep learning
Oxidation states are the charges of atoms after their ionic approximation of their bonds,
which have been widely used in charge-neutrality verification, crystal structure …
which have been widely used in charge-neutrality verification, crystal structure …
CardioGenAI: A Machine Learning-Based Framework for Re-Engineering Drugs for Reduced hERG Liability
Drug-induced cardiotoxicity is a major health concern which can lead to serious adverse
effects including life-threatening cardiac arrhythmias via the blockade of the voltage-gated …
effects including life-threatening cardiac arrhythmias via the blockade of the voltage-gated …
A Large Encoder-Decoder Family of Foundation Models For Chemical Language
Large-scale pre-training methodologies for chemical language models represent a
breakthrough in cheminformatics. These methods excel in tasks such as property prediction …
breakthrough in cheminformatics. These methods excel in tasks such as property prediction …
Empirical Evidence for the Fragment level Understanding on Drug Molecular Structure of LLMs
AI for drug discovery has been a research hotspot in recent years, and SMILES-based
language models has been increasingly applied in drug molecular design. However, no …
language models has been increasingly applied in drug molecular design. However, no …
Learning Improved Representations Through Informed Self-Supervision: Applications to Drug Discovery
KE Kirchoff - 2024 - search.proquest.com
In recent years, deep learning methodologies have afforded unparalleled computational
advancements, from artistic generation and self-driving cars, to voice assistants and …
advancements, from artistic generation and self-driving cars, to voice assistants and …