Clustering methods and their uses in computational chemistry

GM Downs, JM Barnard - Reviews in computational chemistry, 2002 - Wiley Online Library
Clustering is a data analysis technique that, when applied to a set of heterogeneous items,
identifies homogeneous subgroups as defined by a given model or measure of similarity. Of …

Basic overview of chemoinformatics

T Engel - Journal of chemical information and modeling, 2006 - ACS Publications
There is no particular point in time that determines when chemoinformatics was founded or
established. It slowly evolved from several, often quite humble beginnings. Scientists in …

Analysis and comparison of 2D fingerprints: insights into database screening performance using eight fingerprint methods

J Duan, SL Dixon, JF Lowrie, W Sherman - Journal of Molecular Graphics …, 2010 - Elsevier
Virtual screening is a widely used strategy in modern drug discovery and 2D fingerprint
similarity is an important tool that has been successfully applied to retrieve active …

[引用][C] An Introduction to Chemoinformatics

AR Leach - 2007 - books.google.com
Chemoinformatics draws upon techniques from many disciplines including computer
science, mathematics, computational chemistry and data visualisation to tackle these …

Robustness of biological activity spectra predicting by computer program PASS for noncongeneric sets of chemical compounds

VV Poroikov, DA Filimonov, YV Borodina… - Journal of chemical …, 2000 - ACS Publications
The computer system PASS provides simultaneous prediction of several hundreds of
biological activity types for any drug-like compound. The prediction is based on the analysis …

Selected concepts and investigations in compound classification, molecular descriptor analysis, and virtual screening

J Bajorath - Journal of chemical information and computer …, 2001 - ACS Publications
Compound classification and virtual screening methods are capable of exploring and
exploiting molecular similarity beyond chemistry, in accordance with the similar property …

LINGO, an efficient holographic text based method to calculate biophysical properties and intermolecular similarities

D Vidal, M Thormann, M Pons - Journal of chemical information …, 2005 - ACS Publications
SMILES strings are the most compact text based molecular representations. Implicitly they
contain the information needed to compute all kinds of molecular structures and, thus …

Clustering of high throughput gene expression data

H Pirim, B Ekşioğlu, AD Perkins, Ç Yüceer - Computers & operations …, 2012 - Elsevier
High throughput biological data need to be processed, analyzed, and interpreted to address
problems in life sciences. Bioinformatics, computational biology, and systems biology deal …

A universal molecular descriptor system for prediction of logP, logS, logBB, and absorption

H Sun - Journal of chemical information and computer sciences, 2004 - ACS Publications
Predictive models for octanol/water partition coefficient (logP), aqueous solubility (logS),
blood-brain barrier (logBB), and human intestinal absorption (HIA) were built from a …

New methodologies for ligand-based virtual screening

FL Stahura, J Bajorath - Current pharmaceutical design, 2005 - ingentaconnect.com
Computational screening of compound databases has become increasingly popular in
pharmaceutical research. Virtual screening approaches can roughly be divided into target …