[HTML][HTML] Clinical decision support systems for improving diagnostic accuracy and achieving precision medicine

C Castaneda, K Nalley… - Journal of …, 2015 - jclinbioinformatics.biomedcentral …
As research laboratories and clinics collaborate to achieve precision medicine, both
communities are required to understand mandated electronic health/medical record …

[HTML][HTML] State of the nation in data integration for bioinformatics

C Goble, R Stevens - Journal of biomedical informatics, 2008 - Elsevier
Data integration is a perennial issue in bioinformatics, with many systems being developed
and many technologies offered as a panacea for its resolution. The fact that it is still a …

bioDBnet: the biological database network

U Mudunuri, A Che, M Yi, RM Stephens - Bioinformatics, 2009 - academic.oup.com
bioDBnet is an online web resource that provides interconnected access to many types of
biological databases. It has integrated many of the most commonly used biological …

[HTML][HTML] FlyMine: an integrated database for Drosophila and Anopheles genomics

R Lyne, R Smith, K Rutherford, M Wakeling, A Varley… - Genome biology, 2007 - Springer
FlyMine is a data warehouse that addresses one of the important challenges of modern
biology: how to integrate and make use of the diversity and volume of current biological …

Categorization and filtering of scientific data

I Kupershmidt, QJ Su, Q Liu, S Alag… - US Patent …, 2015 - Google Patents
The present invention relates to methods, systems and apparatus for capturing, integrating,
organizing, navigating and querying large-scale data from high-throughput biological and …

Genome variation in Cryptococcus gattii, an emerging pathogen of immunocompetent hosts

CA D'souza, JW Kronstad, G Taylor, R Warren, M Yuen… - MBio, 2011 - Am Soc Microbiol
Cryptococcus gattii recently emerged as the causative agent of cryptococcosis in healthy
individuals in western North America, despite previous characterization of the fungus as a …

[HTML][HTML] BioWarehouse: a bioinformatics database warehouse toolkit

TJ Lee, Y Pouliot, V Wagner, P Gupta… - BMC …, 2006 - Springer
Background This article addresses the problem of interoperation of heterogeneous
bioinformatics databases. Results We introduce BioWarehouse, an open source toolkit for …

[HTML][HTML] LabKey Server: an open source platform for scientific data integration, analysis and collaboration

EK Nelson, B Piehler, J Eckels… - BMC …, 2011 - bmcbioinformatics.biomedcentral …
Broad-based collaborations are becoming increasingly common among disease
researchers. For example, the Global HIV Enterprise has united cross-disciplinary consortia …

Ontologies and semantic data integration

SP Gardner - Drug discovery today, 2005 - Elsevier
The increased generation of data in the pharmaceutical R&D process has failed to generate
the expected returns in terms of enhanced productivity and pipelines. The inability of existing …

[HTML][HTML] TargetMine, an integrated data warehouse for candidate gene prioritisation and target discovery

YA Chen, LP Tripathi, K Mizuguchi - PloS one, 2011 - journals.plos.org
Prioritising candidate genes for further experimental characterisation is a non-trivial
challenge in drug discovery and biomedical research in general. An integrated approach …