[HTML][HTML] From genotypes to organisms: State-of-the-art and perspectives of a cornerstone in evolutionary dynamics

S Manrubia, JA Cuesta, J Aguirre, SE Ahnert… - Physics of Life …, 2021 - Elsevier
Understanding how genotypes map onto phenotypes, fitness, and eventually organisms is
arguably the next major missing piece in a fully predictive theory of evolution. We refer to this …

Fisher's Geometric Model as a Tool to Study Speciation

H Schneemann, B De Sanctis… - Cold Spring Harbor …, 2024 - cshperspectives.cshlp.org
Interactions between alleles and across environments play an important role in the fitness of
hybrids and are at the heart of the speciation process. Fitness landscapes capture these …

[HTML][HTML] Robustness and innovation in synthetic genotype networks

J Santos-Moreno, E Tasiudi… - Nature …, 2023 - nature.com
Genotype networks are sets of genotypes connected by small mutational changes that share
the same phenotype. They facilitate evolutionary innovation by enabling the exploration of …

Multi-locus interactions and the build-up of reproductive isolation

I Satokangas, SH Martin… - … of the Royal …, 2020 - royalsocietypublishing.org
All genes interact with other genes, and their additive effects and epistatic interactions affect
an organism's phenotype and fitness. Recent theoretical and empirical work has advanced …

[HTML][HTML] Reproductive isolation arises during laboratory adaptation to a novel hot environment

SK Hsu, WY Lai, J Novak, F Lehner, AM Jakšić… - Genome Biology, 2024 - Springer
Background Reproductive isolation can result from adaptive processes (eg, ecological
speciation and mutation-order speciation) or stochastic processes such as “system drift” …

Toward a theory of homology: development and the de-coupling of morphological and molecular evolution

J DiFrisco - The British Journal for the Philosophy of Science, 2023 - journals.uchicago.edu
Advances in developmental genetics and evo-devo in the last several decades have
enabled the growth of novel developmental approaches to the classic theme of homology …

Environment-dependent epistasis increases phenotypic diversity in gene regulatory networks

F Baier, F Gauye, R Perez-Carrasco, JL Payne… - Science …, 2023 - science.org
Mutations to gene regulatory networks can be maladaptive or a source of evolutionary
novelty. Epistasis confounds our understanding of how mutations affect the expression …

[HTML][HTML] Multi-character approach reveals a new mangrove population of the Yellow Warbler complex, Setophaga petechia, on Cozumel Island, Mexico

S Machkour-M'Rabet, W Santamaría-Rivero… - Plos one, 2023 - journals.plos.org
The Setophaga petechia complex includes 43 subspecies distributed within the new world,
of which some are migratory and others are resident, with only two resident subspecies in …

Synthetic genotype networks

J Santos-Moreno, E Tasiudi, H Kusumawardhani… - bioRxiv, 2022 - biorxiv.org
Genotype networks are sets of genotypes connected by small mutational changes that share
the same phenotype. They facilitate evolutionary innovation by enabling the exploration of …

Uncovering patterns of the evolution of genomic sequence entropy and complexity

RP Simões, IR Wolf, BA Correa, GT Valente - Molecular Genetics and …, 2021 - Springer
The lack of consensus concerning the biological meaning of entropy and complexity of
genomes and the different ways to assess these data hamper conclusions concerning what …