Daphnia as a versatile model system in ecology and evolution

D Ebert - EvoDevo, 2022 - Springer
Water fleas of the genus Daphnia have been a model system for hundreds of years and is
among the best studied ecological model organisms to date. Daphnia are planktonic …

Variation in recombination frequency and distribution across eukaryotes: patterns and processes

J Stapley, PGD Feulner… - … of the Royal …, 2017 - royalsocietypublishing.org
Recombination, the exchange of DNA between maternal and paternal chromosomes during
meiosis, is an essential feature of sexual reproduction in nearly all multicellular organisms …

From molecules to populations: appreciating and estimating recombination rate variation

JV Peñalba, JBW Wolf - Nature Reviews Genetics, 2020 - nature.com
Recombination is a central biological process with implications for many areas in the life
sciences. Yet we are only beginning to appreciate variation in the recombination rate along …

A New Reference Genome Assembly for the Microcrustacean Daphnia pulex

Z Ye, S Xu, K Spitze, J Asselman, X Jiang… - G3: Genes …, 2017 - academic.oup.com
Comparing genomes of closely related genotypes from populations with distinct
demographic histories can help reveal the impact of effective population size on genome …

Evolutionary genomics of a subdivided species

T Maruki, Z Ye, M Lynch - Molecular biology and evolution, 2022 - academic.oup.com
The ways in which genetic variation is distributed within and among populations is a key
determinant of the evolutionary features of a species. However, most comprehensive studies …

Large-Scale Genomic Analyses and Toxinotyping of Clostridium perfringens Implicated in Foodborne Outbreaks in France

A Mahamat Abdelrahim, N Radomski… - Frontiers in …, 2019 - frontiersin.org
Clostridium perfringens is both an ubiquitous environmental bacterium and the fourth most
common causative agent of foodborne outbreaks (FBOs) in France and Europe. These …

Chromonomer: a tool set for repairing and enhancing assembled genomes through integration of genetic maps and conserved synteny

J Catchen, A Amores, S Bassham - G3: Genes, Genomes …, 2020 - academic.oup.com
The pace of the sequencing and computational assembly of novel reference genomes is
accelerating. Though DNA sequencing technologies and assembly software tools continue …

High-resolution mapping of crossover and non-crossover recombination events by whole-genome re-sequencing of an avian pedigree

L Smeds, CF Mugal, A Qvarnström, H Ellegren - PLoS genetics, 2016 - journals.plos.org
Recombination is an engine of genetic diversity and therefore constitutes a key process in
evolutionary biology and genetics. While the outcome of crossover recombination can …

Sex determination and differentiation in decapod and cladoceran crustaceans: An overview of endocrine regulation

K Toyota, H Miyakawa, C Hiruta, T Sato, H Katayama… - Genes, 2021 - mdpi.com
Mechanisms underlying sex determination and differentiation in animals are known to
encompass a diverse array of molecular clues. Recent innovations in high-throughput …

Spontaneous Mutation Accumulation in Daphnia pulex in Selection-Free vs. Competitive Environments

JM Flynn, FJJ Chain, DJ Schoen… - Molecular Biology and …, 2017 - academic.oup.com
Understanding the rates, spectra, and fitness effects of spontaneous mutations is
fundamental to answering key questions in evolution, molecular biology, disease genetics …