An empirical comparison of population genetic analyses using microsatellite and SNP data for a species of conservation concern

SJ Zimmerman, CL Aldridge, SJ Oyler-McCance - BMC genomics, 2020 - Springer
Background Use of genomic tools to characterize wildlife populations has increased in
recent years. In the past, genetic characterization has been accomplished with more …

A comparison of single nucleotide polymorphism and microsatellite markers for analysis of parentage and kinship in a cooperatively breeding bird

LR Weinman, JW Solomon… - Molecular ecology …, 2015 - Wiley Online Library
The development of genetic markers has revolutionized molecular studies within and among
populations. Although poly‐allelic microsatellites are the most commonly used genetic …

Targeted multiplex next‐generation sequencing: advances in techniques of mitochondrial and nuclear DNA sequencing for population genomics

BL Hancock‐Hanser, A Frey, MS Leslie… - Molecular Ecology …, 2013 - Wiley Online Library
Next‐generation sequencing (NGS) is emerging as an efficient and cost‐effective tool in
population genomic analyses of nonmodel organisms, allowing simultaneous resequencing …

Conservation Genomics of the Declining North American Bumblebee Bombus terricola Reveals Inbreeding and Selection on Immune Genes

CF Kent, A Dey, H Patel, N Tsvetkov, T Tiwari… - Frontiers in …, 2018 - frontiersin.org
The yellow-banded bumblebee Bombus terricola was common in North America but has
recently declined and is now on the IUCN Red List of threatened species. The causes of B …

Oceanographic barriers, divergence, and admixture: Phylogeography and taxonomy of two putative subspecies of short‐finned pilot whale

AM Van Cise, RW Baird, CS Baker, S Cerchio… - Molecular …, 2019 - Wiley Online Library
Genomic phylogeography plays an important role in describing evolutionary processes and
their geographic, ecological, or cultural drivers. These drivers are often poorly understood in …

Familial social structure and socially driven genetic differentiation in Hawaiian short‐finned pilot whales

AM Van Cise, KK Martien, SD Mahaffy… - Molecular …, 2017 - Wiley Online Library
Social structure can have a significant impact on divergence and evolution within species,
especially in the marine environment, which has few environmental boundaries to dispersal …

Targeted resequencing of coding DNA sequences for SNP discovery in nonmodel species

DW Förster, JK Bull, D Lenz… - Molecular ecology …, 2018 - Wiley Online Library
Targeted capture coupled with high‐throughput sequencing can be used to gain information
about nuclear sequence variation at hundreds to thousands of loci. Divergent reference …

Southern marsh deer (Blastocerus dichotomus) populations assessed using Amplicon Sequencing on fecal samples

LI Wolfenson, JA Pereira, DE Ruzzante… - Scientific Reports, 2024 - nature.com
Populations in isolated and small fragments lose genetic variability very fast and are usually
of conservation concern because they are at greater risk of local extinction. The largest …

Population genetic inferences using immune gene SNPs mirror patterns inferred by microsatellites

JP Elbers, RW Clostio, SS Taylor - Molecular Ecology …, 2017 - Wiley Online Library
Single nucleotide polymorphisms (SNP s) are replacing microsatellites for population
genetic analyses, but it is not apparent how many SNP s are needed or how well SNP s …

A single multiplex of twelve microsatellite markers for the simultaneous study of the brown hare (Lepus europaeus) and the mountain hare (Lepus timidus)

MP Beugin, J Letty, C Kaerle, JS Guitton… - Ecology and …, 2017 - Wiley Online Library
The management of hunted species is challenging, as it must conciliate the conservation of
species and their sustainable exploitation. Nongenetic tools are widely used in this context …