mRNA-based therapeutics: powerful and versatile tools to combat diseases
S Qin, X Tang, Y Chen, K Chen, N Fan… - Signal transduction and …, 2022 - nature.com
The therapeutic use of messenger RNA (mRNA) has fueled great hope to combat a wide
range of incurable diseases. Recent rapid advances in biotechnology and molecular …
range of incurable diseases. Recent rapid advances in biotechnology and molecular …
Intelligent biomaterialomics: molecular design, manufacturing, and biomedical applications
Y Yi, HW An, H Wang - Advanced Materials, 2024 - Wiley Online Library
Materialomics integrates experiment, theory, and computation in a high‐throughput manner,
and has changed the paradigm for the research and development of new functional …
and has changed the paradigm for the research and development of new functional …
De novo discovery of thiopeptide pseudo-natural products acting as potent and selective TNIK kinase inhibitors
AA Vinogradov, Y Zhang, K Hamada… - Journal of the …, 2022 - ACS Publications
Bioengineering of ribosomally synthesized and post-translationally modified peptides
(RiPPs) is an emerging approach to explore the diversity of pseudo-natural product …
(RiPPs) is an emerging approach to explore the diversity of pseudo-natural product …
Deep Learning-Driven Library Design for the De Novo Discovery of Bioactive Thiopeptides
JS Chang, AA Vinogradov, Y Zhang, Y Goto… - ACS Central …, 2023 - ACS Publications
Broad substrate tolerance of ribosomally synthesized and post-translationally modified
peptide (RiPP) biosynthetic enzymes has allowed numerous strategies for RiPP …
peptide (RiPP) biosynthetic enzymes has allowed numerous strategies for RiPP …
Discovery of Thioether-Cyclized Macrocyclic Covalent Inhibitors by mRNA Display
Macrocyclic peptides are promising scaffolds for the covalent ligand discovery. However,
platforms enabling the direct identification of covalent macrocyclic ligands in a high …
platforms enabling the direct identification of covalent macrocyclic ligands in a high …
Large-scale analysis of mRNA sequences localized near the start and amber codons and their impact on the diversity of mRNA display libraries
S Umemoto, T Kondo, T Fujino, G Hayashi… - Nucleic Acids …, 2023 - academic.oup.com
Extremely diverse libraries are essential for effectively selecting functional peptides or
proteins, and mRNA display technology is a powerful tool for generating such libraries with …
proteins, and mRNA display technology is a powerful tool for generating such libraries with …
Accurate models of substrate preferences of post-translational modification enzymes from a combination of mRNA display and deep learning
AA Vinogradov, JS Chang, H Onaka, Y Goto… - ACS Central …, 2022 - ACS Publications
Promiscuous post-translational modification (PTM) enzymes often display nonobvious
substrate preferences by acting on diverse yet well-defined sets of peptides and/or proteins …
substrate preferences by acting on diverse yet well-defined sets of peptides and/or proteins …
Selection of target-binding proteins from the information of weakly enriched phage display libraries by deep sequencing and machine learning
Despite the advances in surface-display systems for directed evolution, variants with high
affinity are not always enriched due to undesirable biases that increase target-unrelated …
affinity are not always enriched due to undesirable biases that increase target-unrelated …
Natural and man-made cyclic peptide-based antibiotics
S Lai, Q Zhang, L Jin - Antibiotics, 2022 - mdpi.com
In recent years, an increasing number of drug-resistant bacterial strains have been identified
due to the abuse of antibiotics, which seriously threatens human and animal health …
due to the abuse of antibiotics, which seriously threatens human and animal health …
Directed evolution of PD-L1-targeted affibodies by mRNA display
Therapeutic monoclonal antibodies directed against PD-L1 (eg, atezolizumab) disrupt PD-
L1: PD-1 signaling and reactivate exhausted cytotoxic T-cells in the tumor compartment …
L1: PD-1 signaling and reactivate exhausted cytotoxic T-cells in the tumor compartment …