Leveraging artificial intelligence in the fight against infectious diseases

F Wong, C de la Fuente-Nunez, JJ Collins - Science, 2023 - science.org
Despite advances in molecular biology, genetics, computation, and medicinal chemistry,
infectious disease remains an ominous threat to public health. Addressing the challenges …

The importance of antimicrobial resistance in medical mycology

NAR Gow, C Johnson, J Berman, AT Coste… - Nature …, 2022 - nature.com
Prior to the SARS-CoV-2 pandemic, antibiotic resistance was listed as the major global
health care priority. Some analyses, including the O'Neill report, have predicted that deaths …

TTD: Therapeutic Target Database describing target druggability information

Y Zhou, Y Zhang, D Zhao, X Yu, X Shen… - Nucleic acids …, 2024 - academic.oup.com
Target discovery is one of the essential steps in modern drug development, and the
identification of promising targets is fundamental for developing first-in-class drug. A variety …

Confronting antifungal resistance, tolerance, and persistence: advances in drug target discovery and delivery systems

L Chen, L Zhang, Y Xie, Y Wang, X Tian, W Fang… - Advanced Drug Delivery …, 2023 - Elsevier
Human pathogenic fungi pose a serious threat to human health and safety. Unfortunately,
the limited number of antifungal options is exacerbated by the continuous emergence of …

The role of Candida albicans stress response pathways in antifungal tolerance and resistance

KR Iyer, N Robbins, LE Cowen - Iscience, 2022 - cell.com
Human fungal pathogens are the causative agents of devastating diseases across the
globe, and the increasing prevalence of drug resistance threatens to undermine the already …

Respiration supports intraphagosomal filamentation and escape of Candida albicans from macrophages

NT Case, J Westman, MT Hallett, J Plumb, A Farheen… - Mbio, 2023 - Am Soc Microbiol
For the human fungal pathogen Candida albicans, metabolic flexibility and the ability to
transition between yeast and filamentous growth states are key virulence traits that enable …

[HTML][HTML] InParanoiDB 9: ortholog groups for protein domains and full-length proteins

E Persson, ELL Sonnhammer - Journal of Molecular Biology, 2023 - Elsevier
Prediction of orthologs is an important bioinformatics pursuit that is frequently used for
inferring protein function and evolutionary analyses. The InParanoid database is a well …

Antifungal discovery

N Robbins, LE Cowen - Current opinion in microbiology, 2022 - Elsevier
Highlights•Fungi have a serious impact on human health, causing millions of deaths
worldwide.•Scientific advances have enabled the discovery of novel antifungals.•This review …

Integration of graph neural networks and genome-scale metabolic models for predicting gene essentiality

R Hasibi, T Michoel, DA Oyarzún - npj Systems Biology and …, 2024 - nature.com
Genome-scale metabolic models are powerful tools for understanding cellular physiology.
Flux balance analysis (FBA), in particular, is an optimization-based approach widely …

Development and applications of a CRISPR activation system for facile genetic overexpression in Candida albicans

NC Gervais, AA La Bella, LF Wensing, J Sharma… - G3, 2023 - academic.oup.com
For the fungal pathogen Candida albicans, genetic overexpression readily occurs via a
diversity of genomic alterations, such as aneuploidy and gain-of-function mutations, with …