[HTML][HTML] Neurodegeneration cell per cell

S Balusu, R Praschberger, E Lauwers, B De Strooper… - Neuron, 2023 - cell.com
The clinical definition of neurodegenerative diseases is based on symptoms that reflect
terminal damage of specific brain regions. This is misleading as it tells little about the initial …

Multiplexed single-cell analysis of organoid signaling networks

J Sufi, X Qin, FC Rodriguez, YJ Bu, P Vlckova… - Nature protocols, 2021 - nature.com
Organoids are biomimetic tissue models comprising multiple cell types and cell states. Post-
translational modification (PTM) signaling networks control cellular phenotypes and are …

Joint single-cell measurements of nuclear proteins and RNA in vivo

H Chung, CN Parkhurst, EM Magee, D Phillips… - Nature …, 2021 - nature.com
Identifying gene-regulatory targets of nuclear proteins in tissues is a challenge. Here we
describe intranuclear cellular indexing of transcriptomes and epitopes (inCITE-seq), a …

NEAT-seq: simultaneous profiling of intra-nuclear proteins, chromatin accessibility and gene expression in single cells

AF Chen, B Parks, AS Kathiria, B Ober-Reynolds… - Nature …, 2022 - nature.com
In this work, we describe NEAT-seq (sequencing of nuclear protein epitope abundance,
chromatin accessibility and the transcriptome in single cells), enabling interrogation of …

MUON: multimodal omics analysis framework

D Bredikhin, I Kats, O Stegle - Genome biology, 2022 - Springer
Advances in multi-omics have led to an explosion of multimodal datasets to address
questions from basic biology to translation. While these data provide novel opportunities for …

Hydrop enables droplet-based single-cell ATAC-seq and single-cell RNA-seq using dissolvable hydrogel beads

FV De Rop, JN Ismail, CB González-Blas… - Elife, 2022 - elifesciences.org
Single-cell RNA-seq and single-cell assay for transposase-accessible chromatin (ATAC-
seq) technologies are used extensively to create cell type atlases for a wide range of …

CRISPR screening in hematology research: from bulk to single-cell level

S Meyers, S Demeyer, J Cools - Journal of Hematology & Oncology, 2023 - Springer
The CRISPR genome editing technology has revolutionized the way gene function is
studied. Genome editing can be achieved in single genes or for thousands of genes …

High-throughput microfluidic droplets in biomolecular analytical system: A review

L Zhang, R Parvin, M Chen, D Hu, Q Fan… - Biosensors and …, 2023 - Elsevier
Droplet microfluidic technology has revolutionized biomolecular analytical research, as it
has the capability to reserve the genotype-to-phenotype linkage and assist for revealing the …

Progress in single-cell multimodal sequencing and multi-omics data integration

X Wang, X Wu, N Hong, W Jin - Biophysical Reviews, 2024 - Springer
With the rapid advance of single-cell sequencing technology, cell heterogeneity in various
biological processes was dissected at different omics levels. However, single-cell mono …

Artificial neural networks enable genome-scale simulations of intracellular signaling

A Nilsson, JM Peters, N Meimetis, B Bryson… - Nature …, 2022 - nature.com
Mammalian cells adapt their functional state in response to external signals in form of
ligands that bind receptors on the cell-surface. Mechanistically, this involves signal …