Rational design in photopharmacology with molecular photoswitches
Photopharmacology is an attractive approach for achieving targeted drug action with the use
of light. In photopharmacology, molecular photoswitches are introduced into the structure of …
of light. In photopharmacology, molecular photoswitches are introduced into the structure of …
Learning molecular representations for medicinal chemistry: miniperspective
KV Chuang, LM Gunsalus… - Journal of Medicinal …, 2020 - ACS Publications
The accurate modeling and prediction of small molecule properties and bioactivities depend
on the critical choice of molecular representation. Decades of informatics-driven research …
on the critical choice of molecular representation. Decades of informatics-driven research …
Molecular graph convolutions: moving beyond fingerprints
Molecular “fingerprints” encoding structural information are the workhorse of
cheminformatics and machine learning in drug discovery applications. However, fingerprint …
cheminformatics and machine learning in drug discovery applications. However, fingerprint …
Molecular recognition in chemical and biological systems
E Persch, O Dumele, F Diederich - … Chemie International Edition, 2015 - Wiley Online Library
Abstract Structure‐based ligand design in medicinal chemistry and crop protection relies on
the identification and quantification of weak noncovalent interactions and understanding the …
the identification and quantification of weak noncovalent interactions and understanding the …
Enumeration of 166 billion organic small molecules in the chemical universe database GDB-17
L Ruddigkeit, R Van Deursen, LC Blum… - Journal of chemical …, 2012 - ACS Publications
Drug molecules consist of a few tens of atoms connected by covalent bonds. How many
such molecules are possible in total and what is their structure? This question is of pressing …
such molecules are possible in total and what is their structure? This question is of pressing …
Pharmit: interactive exploration of chemical space
Abstract Pharmit (http://pharmit. csb. pitt. edu) provides an online, interactive environment for
the virtual screening of large compound databases using pharmacophores, molecular …
the virtual screening of large compound databases using pharmacophores, molecular …
Practical aspects of free-energy calculations: a review
N Hansen, WF Van Gunsteren - Journal of chemical theory and …, 2014 - ACS Publications
Free-energy calculations in the framework of classical molecular dynamics simulations are
nowadays used in a wide range of research areas including solvation thermodynamics …
nowadays used in a wide range of research areas including solvation thermodynamics …
Defining levels of automated chemical design
One application area of computational methods in drug discovery is the automated design of
small molecules. Despite the large number of publications describing methods and their …
small molecules. Despite the large number of publications describing methods and their …
The symbiotic relationship between drug discovery and organic chemistry
OO Grygorenko, DM Volochnyuk… - … A European Journal, 2020 - Wiley Online Library
All pharmaceutical products contain organic molecules; the source may be a natural product
or a fully synthetic molecule, or a combination of both. Thus, it follows that organic chemistry …
or a fully synthetic molecule, or a combination of both. Thus, it follows that organic chemistry …
Rational approaches to improving selectivity in drug design
Appropriate tuning of binding selectivity is a primary objective in the discovery and
optimization of a compound on the path toward developing a drug. The environment in …
optimization of a compound on the path toward developing a drug. The environment in …