[HTML][HTML] Neurospora intermedia from a traditional fermented food enables waste-to-food conversion

V Maini Rekdal, JM Villalobos-Escobedo… - Nature …, 2024 - nature.com
Fungal fermentation of food and agricultural by-products holds promise for improving food
sustainability and security. However, the molecular basis of fungal waste-to-food upcycling …

[HTML][HTML] The Sordariomycetes: an expanding resource with Big Data for mining in evolutionary genomics and transcriptomics

Z Wang, W Kim, YW Wang, E Yakubovich… - Frontiers in Fungal …, 2023 - frontiersin.org
Advances in genomics and transcriptomics accompanying the rapid accumulation of omics
data have provided new tools that have transformed and expanded the traditional concepts …

[HTML][HTML] Navigating the labyrinth–Searching for mechanistic clues to explain the evolution of sequestrate Agaricales with labyrinthine internal chambers

AR Nilsen, JM Plett, TW May, T Lebel, CM Brown… - Fungal biology …, 2024 - Elsevier
Fungi exhibit a wide range of sporophore morphologies. Amongst the Agaricomycetes,
sporophores include mushroom, coralloid, bracket and sequestrate forms. A striking …

Near-gapless genome and transcriptome analyses provide insights into fruiting body development in Lentinula edodes

N Shen, H Xie, K Liu, X Li, L Wang, Y Deng… - International Journal of …, 2024 - Elsevier
Fruiting body development in macrofungi is an intensive research subject. In this study, high-
quality genomes were assembled for two sexually compatible monokaryons from a …

Role and structure of the small subunit forming heterodimers with laccase‐like enzymes

P Aza, D Linde, G Molpeceres, J Vind… - Protein …, 2023 - Wiley Online Library
Unlike laccases sensu stricto, which are usually monomeric enzymes, laccase‐like enzymes
recently re‐classified as Novel Laccases (NLACs) are characterized by the formation of …

[HTML][HTML] Recent advances and role of melatonin in post-harvest quality preservation of shiitake (Lentinula edodes)

HU Asdullah, F Chen, MA Hassan, A Abbas… - Frontiers in …, 2024 - frontiersin.org
Shiitake mushrooms are renowned for their popularity and robust nutritional value, are
susceptible to spoilage due to their inherent biodegradability. Nevertheless, because of their …

[HTML][HTML] The genus Cortinarius should not (yet) be split

B Gallone, TW Kuyper, J Nuytinck - IMA fungus, 2024 - Springer
Abstract The genus Cortinarius (Agaricales, Basidiomycota) is one of the most species-rich
fungal genera, with thousands of species reported. Cortinarius species are important …

PhyKIT: A Multitool for Phylogenomics

J Steenwyk, G Martínez-Redondo, T Buida… - 2024 - preprints.org
Multiple sequence alignments and phylogenetic trees are rich in biological information and
are fundamental to research in biology. PhyKIT is a tool for processing and analyzing the …

Mycotools: an automated and scalable platform for comparative genomics

Z Konkel, JC Slot - bioRxiv, 2023 - biorxiv.org
Comparative genomics comprises analyses that investigate the genetic basis of organismal
biology and ecology, which have also been applied to high throughput trait screening for …

[HTML][HTML] Reticulate evolution: Detection and utility in the phylogenomics era

S Bjornson, H Verbruggen, NS Upham… - Molecular Phylogenetics …, 2024 - Elsevier
Phylogenomics has enriched our understanding that the Tree of Life can have network-like
or reticulate structures among some taxa and genes. Two non-vertical modes of evolution …