Removing duplicate and near-duplicate reads, generated by high-throughput sequencing
technologies, is able to reduce computational resources in downstream applications. Here …

MicroRNAs (miRNAs) are single-stranded, endogenous, non-coding RNAs of 20–24
nucleotides that play a significant role in post-transcriptional gene regulation. Various …

In the last decade, metagenomics has greatly revolutionized the study of microbial
communities. However, the presence of artificial duplicate reads raised mainly from the …

The current redundant sequence deduplication algorithms cannot remove structural
repetitive DNA short reads such as mirror, reverse, paired, and complementary palindromes …

We present Nubeam-dedup, a fast and RAM-efficient tool to de-duplicate sequencing reads
without reference genome. Nubeam-dedup represents nucleotides by matrices, transforms …

Pseudomonas sp. CT364 was isolated from olive tree rhizosphere in Seville (Spain). We
report its complete genome sequence, acquired by co-assembling Illumina and Nanopore …

The development of omics sciences has been greatly influenced by sequencing
technologies. However, the large volume of data generated by these technologies …

Abstract The Next-Generation Sequencing (NGS) platforms produce massive amounts of
data to analyze various features in environmental samples. These data contain multiple …

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The data volume produced by the omic sciences nowadays was driven by the adoption of
new generation sequencing platforms, popularly called NGS (Next Generation Sequencing) …