Plassembler: an automated bacterial plasmid assembly tool
With recent advances in sequencing technologies, it is now possible to obtain near-perfect
complete bacterial chromosome assemblies cheaply and efficiently by combining a long …
complete bacterial chromosome assemblies cheaply and efficiently by combining a long …
Inter-species gene flow drives ongoing evolution of Streptococcus pyogenes and Streptococcus dysgalactiae subsp. equisimilis
Streptococcus dysgalactiae subsp. equisimilis (SDSE) is an emerging cause of human
infection with invasive disease incidence and clinical manifestations comparable to the …
infection with invasive disease incidence and clinical manifestations comparable to the …
A minireview on the bioinformatics analysis of mobile gene elements in microbiome research
J Schwarzerova, A Labanava, I Rychlik… - Frontiers in …, 2023 - frontiersin.org
The horizontal transfer of mobile gene elements between bacteria plays a crucial role in
their evolutionary dynamics. Additionally, it enables the accumulation and dissemination of …
their evolutionary dynamics. Additionally, it enables the accumulation and dissemination of …
Applying rearrangement distances to enable plasmid epidemiology with pling
D Frolova, L Lima, LW Roberts… - Microbial …, 2024 - microbiologyresearch.org
Plasmids are a key vector of antibiotic resistance, but the current bioinformatics toolkit is not
well suited to tracking them. The rapid structural changes seen in plasmid genomes present …
well suited to tracking them. The rapid structural changes seen in plasmid genomes present …
Global genomic epidemiology of blaGES-5 carbapenemase-associated integrons
Antimicrobial resistance (AMR) gene cassettes comprise an AMR gene flanked by short
recombination sites (attI and attC or attC and attC). Integrons are genetic elements able to …
recombination sites (attI and attC or attC and attC). Integrons are genetic elements able to …
Plasmid-driven strategies for clone success in Escherichia coli
Escherichia coli is a major human pathogen and the most widely studied microbe in history,
but its extrachromosomal elements known as plasmids remain poorly delineated. Here we …
but its extrachromosomal elements known as plasmids remain poorly delineated. Here we …
High-Risk Lineages of Hybrid Plasmids Carrying Virulence and Carbapenemase Genes
VV Shapovalova, PS Chulkova, VA Ageevets… - Antibiotics, 2024 - mdpi.com
Background/Objectives: Carbapenem-resistant Enterobacterales (CRE) are a global health
threat due to their high morbidity and mortality rates and limited treatment options. This study …
threat due to their high morbidity and mortality rates and limited treatment options. This study …
Анализ плазмид комплекса Klebsiella pneumoniae, несущих кластер генов синтеза аэробактина, представленных в международных базах данных
ВВ Шаповалова, ПС Чулкова… - Антибиотики и …, 2023 - antibiotics-chemotherapy.ru
Аннотация Введение. На данный момент принято выделять два патотипа Klebsiella
pneumoniae—классические и гипервирулентные, обладающие способностью вызывать …
pneumoniae—классические и гипервирулентные, обладающие способностью вызывать …