The expanding role of DNA barcodes: Indispensable tools for ecology, evolution, and conservation

MR Gostel, WJ Kress - Diversity, 2022 - mdpi.com
DNA barcoding has transformed the fields of ecology, evolution, and conservation by
providing a rapid and effective tool for species identification. The growth of DNA barcodes as …

Practical considerations for plant phylogenomics

MR McKain, MG Johnson… - Applications in plant …, 2018 - Wiley Online Library
The past decade has seen a major breakthrough in our ability to easily and inexpensively
sequence genome‐scale data from diverse lineages. The development of high‐throughput …

Effects of nitrogen and phosphorus addition on microbial community composition and element cycling in a grassland soil

M Widdig, A Heintz-Buschart, PM Schleuss… - Soil biology and …, 2020 - Elsevier
Microorganisms mediate nutrient cycling in soils, and thus it is assumed that they largely
control responses of terrestrial ecosystems to anthropogenic nutrient inputs. Therefore, it is …

A Sequel to Sanger: amplicon sequencing that scales

PDN Hebert, TWA Braukmann, SWJ Prosser… - BMC genomics, 2018 - Springer
Background Although high-throughput sequencers (HTS) have largely displaced their
Sanger counterparts, the short read lengths and high error rates of most platforms constrain …

Fungal diversity in the mycangium of an ambrosia beetle Xylosandrus crassiusculus (Coleoptera: Curculionidae) in Japan during their late dispersal season

SA Saragih, S Takemoto, D Kusumoto, N Kamata - Symbiosis, 2021 - Springer
In the present study, we identified the fungal community, including yeasts, in the mycangium
of the ambrosia beetle, Xylosandrus crassiusculus (Coleoptera: Curculionidae) and …

CRIS. py: a versatile and high-throughput analysis program for CRISPR-based genome editing

JP Connelly, SM Pruett-Miller - Scientific reports, 2019 - nature.com
CRISPR-Cas9 technology allows the creation of user-defined genomic modifications in cells
and whole organisms. However, quantifying editing rates in pools of cells or identifying …

Spoilage yeasts: What are the sources of contamination of foods and beverages?

A Hernández, F Pérez-Nevado, S Ruiz-Moyano… - International journal of …, 2018 - Elsevier
Foods and beverages are nutrient-rich ecosystems in which most microorganisms are able
to grow. Moreover, several factors, such as physicochemical characteristics, storage …

Recent past, present, and future of the food microbiome

F De Filippis, E Parente, D Ercolini - Annual Review of Food …, 2018 - annualreviews.org
Sequencing technologies have deeply changed our approach to the study of food microbial
communities. This review describes recent exploitations of high-throughput sequencing …

Competitive interference among rhizobia reduces benefits to hosts

A Rahman, M Manci, C Nadon, IA Perez, WF Farsamin… - Current Biology, 2023 - cell.com
The capacity of beneficial microbes to compete for host infection—and the ability of hosts to
discriminate among them—introduces evolutionary conflict that is predicted to destabilize …

A DNA barcode library for 5,200 German flies and midges (Insecta: Diptera) and its implications for metabarcoding‐based biomonitoring

J Morinière, M Balke, D Doczkal… - Molecular ecology …, 2019 - Wiley Online Library
This study summarizes results of a DNA barcoding campaign on German Diptera, involving
analysis of 45,040 specimens. The resultant DNA barcode library includes records for 2,453 …