Detecting genomic islands using bioinformatics approaches

MGI Langille, WWL Hsiao, FSL Brinkman - Nature Reviews …, 2010 - nature.com
Bacterial genomes contain clusters of genes that are acquired by horizontal transfer, called
genomic islands (GIs). GIs are frequently associated with microbial adaptations that are of …

Prospects of using marine actinobacteria as probiotics in aquaculture

S Das, LR Ward, C Burke - Applied microbiology and biotechnology, 2008 - Springer
Chemotherapeutic agents have been banned for disease management in aquaculture
systems due to the emergence of antibiotic resistance gene and enduring residual effects in …

ICEberg: a web-based resource for integrative and conjugative elements found in Bacteria

D Bi, Z Xu, EM Harrison, C Tai, Y Wei, X He… - Nucleic acids …, 2012 - academic.oup.com
Abstract ICEberg (http://db-mml. sjtu. edu. cn/ICEberg/) is an integrated database that
provides comprehensive information about integrative and conjugative elements (ICEs) …

The Salmonella enterica Pan-genome

A Jacobsen, RS Hendriksen, FM Aaresturp… - Microbial ecology, 2011 - Springer
Salmonella enterica is divided into four subspecies containing a large number of different
serovars, several of which are important zoonotic pathogens and some show a high degree …

PAIDB v2. 0: exploration and analysis of pathogenicity and resistance islands

SH Yoon, YK Park, JF Kim - Nucleic acids research, 2015 - academic.oup.com
Pathogenicity is a complex multifactorial process confounded by the concerted activity of
genetic regions associated with virulence and/or resistance determinants. Pathogenicity …

Current status of the taxonomic position of Fusarium oxysporum formae specialis cubense within the Fusarium oxysporum complex

G Fourie, ET Steenkamp, RC Ploetz, TR Gordon… - Infection, Genetics and …, 2011 - Elsevier
Fusarium oxysporum is an asexual fungal species that includes human and animal
pathogens and a diverse range of nonpathogens. Pathogenic and nonpathogenic strains of …

[HTML][HTML] Bacterial genomic G+ C composition-eliciting environmental adaptation

S Mann, YPP Chen - Genomics, 2010 - Elsevier
Bacterial genomes reflect their adaptation strategies through nucleotide usage trends found
in their chromosome composition. Bacteria, unlike eukaryotes contain a wide range of …

Evolutionary Relationships among the Fusarium oxysporum f. sp. cubense Vegetative Compatibility Groups

G Fourie, ET Steenkamp, TR Gordon… - Applied and …, 2009 - Am Soc Microbiol
Fusarium oxysporum f. sp. cubense, the causal agent of fusarium wilt of banana (Musa spp.),
is one of the most destructive strains of the vascular wilt fungus F. oxysporum. Genetic …

Genomic Island Prediction via Chi‐Square Test and Random Forest Algorithm

M Onesime, Z Yang, Q Dai - Computational and Mathematical …, 2021 - Wiley Online Library
Genomic islands are related to microbial adaptation and carry different genomic
characteristics from the host. Therefore, many methods have been proposed to detect …

Is the Evolution of Salmonella enterica subsp. enterica Linked to Restriction-Modification Systems?

L Roer, RS Hendriksen, P Leekitcharoenphon… - Msystems, 2016 - Am Soc Microbiol
Salmonella enterica subsp. enterica bacteria are highly diverse foodborne pathogens that
are subdivided into more than 1,500 serovars. The diversity is believed to result from …