Euclidean distance geometry and applications
Euclidean distance geometry is the study of Euclidean geometry based on the concept of
distance. This is useful in several applications where the input data consist of an incomplete …
distance. This is useful in several applications where the input data consist of an incomplete …
Recent advances on the interval distance geometry problem
We discuss a discretization-based solution approach for a classic problem in global
optimization, namely the distance geometry problem (DGP). We focus our attention on a …
optimization, namely the distance geometry problem (DGP). We focus our attention on a …
An algorithm to enumerate all possible protein conformations verifying a set of distance constraints
Background The determination of protein structures satisfying distance constraints is an
important problem in structural biology. Whereas the most common method currently …
important problem in structural biology. Whereas the most common method currently …
[HTML][HTML] Minimal NMR distance information for rigidity of protein graphs
Abstract Nuclear Magnetic Resonance (NMR) experiments provide distances between
nearby atoms of a protein molecule. The corresponding structure determination problem is …
nearby atoms of a protein molecule. The corresponding structure determination problem is …
Clifford algebra and the discretizable molecular distance geometry problem
Abstract Nuclear Magnetic Resonance experiments can provide distances between pairs of
atoms of a protein that are close enough and the problem is how to determine the 3D protein …
atoms of a protein that are close enough and the problem is how to determine the 3D protein …
Assigned and unassigned distance geometry: applications to biological molecules and nanostructures
Considering geometry based on the concept of distance, the results found by Menger and
Blumenthal originated a body of knowledge called distance geometry. This survey covers …
Blumenthal originated a body of knowledge called distance geometry. This survey covers …
Recent results on assigned and unassigned distance geometry with applications to protein molecules and nanostructures
In the 2 years since our last 4OR review of distance geometry methods with applications to
proteins and nanostructures, there has been rapid progress in treating uncertainties in the …
proteins and nanostructures, there has been rapid progress in treating uncertainties in the …
Tuning interval Branch-and-Prune for protein structure determination
Abstract The interval Branch and Prune (i BP) algorithm for obtaining solutions to the interval
Discretizable Molecular Distance Geometry Problem (i DMDGP) has proven itself as a …
Discretizable Molecular Distance Geometry Problem (i DMDGP) has proven itself as a …
[图书][B] An introduction to distance geometry applied to molecular geometry
Distance geometry (DG) is a distinct mathematical research area which includes
mathematics and computer science as fundamental components. The fundamental problem …
mathematics and computer science as fundamental components. The fundamental problem …