[HTML][HTML] Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods
J Pawlowski, K Bruce, K Panksep, FI Aguirre… - Science of the Total …, 2022 - Elsevier
Environmental DNA (eDNA) metabarcoding (parallel sequencing of DNA/RNA for
identification of whole communities within a targeted group) is revolutionizing the field of …
identification of whole communities within a targeted group) is revolutionizing the field of …
[HTML][HTML] The future of biotic indices in the ecogenomic era: Integrating (e) DNA metabarcoding in biological assessment of aquatic ecosystems
The bioassessment of aquatic ecosystems is currently based on various biotic indices that
use the occurrence and/or abundance of selected taxonomic groups to define ecological …
use the occurrence and/or abundance of selected taxonomic groups to define ecological …
Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap
T Cordier, L Alonso‐Sáez… - Molecular …, 2021 - Wiley Online Library
A decade after environmental scientists integrated high‐throughput sequencing
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …
Population‐level inferences from environmental DNA—Current status and future perspectives
EE Sigsgaard, MR Jensen… - Evolutionary …, 2020 - Wiley Online Library
Environmental DNA (eDNA) extracted from water samples has recently shown potential as a
valuable source of population genetic information for aquatic macroorganisms. This …
valuable source of population genetic information for aquatic macroorganisms. This …
Can environmental RNA revolutionize biodiversity science?
ME Cristescu - Trends in Ecology & Evolution, 2019 - cell.com
The use of environmental RNA (eRNA) for species identification remains unexplored due to
the observation that in vitro RNA is much less stable than DNA. However, recent lines of …
the observation that in vitro RNA is much less stable than DNA. However, recent lines of …
A comparison of droplet digital polymerase chain reaction (PCR), quantitative PCR and metabarcoding for species‐specific detection in environmental DNA
Targeted species‐specific and community‐wide molecular diagnostics tools are being used
with increasing frequency to detect invasive or rare species. Few studies have compared the …
with increasing frequency to detect invasive or rare species. Few studies have compared the …
Wanted dead or alive? Using metabarcoding of environmental DNA and RNA to distinguish living assemblages for biosecurity applications
High-throughput sequencing metabarcoding studies in marine biosecurity have largely
focused on targeting environmental DNA (eDNA). DNA can persist extracellularly in the …
focused on targeting environmental DNA (eDNA). DNA can persist extracellularly in the …
Embracing environmental genomics and machine learning for routine biomonitoring
Genomics is fast becoming a routine tool in medical diagnostics and cutting-edge
biotechnologies. Yet, its use for environmental biomonitoring is still considered a futuristic …
biotechnologies. Yet, its use for environmental biomonitoring is still considered a futuristic …
Methods for the extraction, storage, amplification and sequencing of DNA from environmental samples
Advances in the sequencing of DNA extracted from media such as soil and water offer huge
opportunities for biodiversity monitoring and assessment, particularly where the collection or …
opportunities for biodiversity monitoring and assessment, particularly where the collection or …
Environmental RNA as a tool for marine community biodiversity assessments
Microscopic organisms are often overlooked in traditional diversity assessments due to the
difficulty of identifying them based on morphology. Metabarcoding is a method for rapidly …
difficulty of identifying them based on morphology. Metabarcoding is a method for rapidly …