Hypergraph models of biological networks to identify genes critical to pathogenic viral response

S Feng, E Heath, B Jefferson, C Joslyn, H Kvinge… - BMC …, 2021 - Springer
Background Representing biological networks as graphs is a powerful approach to reveal
underlying patterns, signatures, and critical components from high-throughput biomolecular …

Higher-order networks representation and learning: A survey

H Tian, R Zafarani - ACM SIGKDD Explorations Newsletter, 2024 - dl.acm.org
Network data has become widespread, larger, and more complex over the years. Traditional
network data is dyadic, capturing the relations among pairs of entities. With the need to …

An open source knowledge graph ecosystem for the life sciences

TJ Callahan, IJ Tripodi, AL Stefanski, L Cappelletti… - Scientific Data, 2024 - nature.com
Translational research requires data at multiple scales of biological organization.
Advancements in sequencing and multi-omics technologies have increased the availability …

[HTML][HTML] Hypergraph-based analysis and design of intelligent collaborative manufacturing space

L Nagy, T Ruppert, A Löcklin, J Abonyi - Journal of Manufacturing Systems, 2022 - Elsevier
A method for hypergraph-based analysis and the design of manufacturing systems has been
developed. The reason for its development is the need to integrate the human workforce into …

Class of models for random hypergraphs

M Barthelemy - Physical Review E, 2022 - APS
Despite the recently exhibited importance of higher-order interactions for various processes,
few flexible (null) models are available. In particular, most studies on hypergraphs focus on …

The simpliciality of higher-order networks

NW Landry, JG Young, N Eikmeier - EPJ Data Science, 2024 - epjds.epj.org
Higher-order networks are widely used to describe complex systems in which interactions
can involve more than two entities at once. In this paper, we focus on inclusion within higher …

Ollivier Ricci curvature of directed hypergraphs

M Eidi, J Jost - Scientific Reports, 2020 - nature.com
Many empirical networks incorporate higher order relations between elements and therefore
are naturally modelled as, possibly directed and/or weighted, hypergraphs, rather than …

Hypergraph and network flow-based quality function deployment

J Abonyi, T Czvetkó - Heliyon, 2022 - cell.com
Quality function deployment (QFD) has been a widely-acknowledged tool for translating
customer requirements into quality product characteristics based on which product …

Attributed Stream Hypergraphs: temporal modeling of node-attributed high-order interactions

A Failla, S Citraro, G Rossetti - Applied Network Science, 2023 - Springer
Recent advances in network science have resulted in two distinct research directions aimed
at augmenting and enhancing representations for complex networks. The first direction, that …

Topological analysis of temporal hypergraphs

A Myers, C Joslyn, B Kay, E Purvine, G Roek… - … Workshop on Algorithms …, 2023 - Springer
In this work we study the topological properties of temporal hypergraphs. Hypergraphs
provide a higher dimensional generalization of a graph that is capable of capturing multi …