Spatial proteomics: a powerful discovery tool for cell biology

E Lundberg, GHH Borner - Nature Reviews Molecular Cell Biology, 2019 - nature.com
Protein subcellular localization is tightly controlled and intimately linked to protein function in
health and disease. Capturing the spatial proteome—that is, the localizations of proteins and …

Subcellular proteomics

JA Christopher, C Stadler, CE Martin… - Nature Reviews …, 2021 - nature.com
The eukaryotic cell is compartmentalized into subcellular niches, including membrane-
bound and membrane-less organelles. Proteins localize to these niches to fulfil their …

Lessons in PROTAC design from selective degradation with a promiscuous warhead

DP Bondeson, BE Smith, GM Burslem… - Cell chemical …, 2018 - cell.com
Inhibiting protein function selectively is a major goal of modern drug discovery. Here, we
report a previously understudied benefit of small molecule proteolysis-targeting chimeras …

Phthalimide conjugation as a strategy for in vivo target protein degradation

GE Winter, DL Buckley, J Paulk, JM Roberts, A Souza… - Science, 2015 - science.org
The development of effective pharmacological inhibitors of multidomain scaffold proteins,
notably transcription factors, is a particularly challenging problem. In part, this is because …

Lenalidomide induces ubiquitination and degradation of CK1α in del (5q) MDS

J Krönke, EC Fink, PW Hollenbach, KJ MacBeth… - Nature, 2015 - nature.com
Lenalidomide is a highly effective treatment for myelodysplastic syndrome (MDS) with
deletion of chromosome 5q (del (5q)). Here, we demonstrate that lenalidomide induces the …

BET bromodomain proteins function as master transcription elongation factors independent of CDK9 recruitment

GE Winter, A Mayer, DL Buckley, MA Erb, JE Roderick… - Molecular cell, 2017 - cell.com
Processive elongation of RNA Polymerase II from a proximal promoter paused state is a rate-
limiting event in human gene control. A small number of regulatory factors influence …

Transcriptional control of autophagy–lysosome function drives pancreatic cancer metabolism

RM Perera, S Stoykova, BN Nicolay, KN Ross… - Nature, 2015 - nature.com
Activation of cellular stress response pathways to maintain metabolic homeostasis is
emerging as a critical growth and survival mechanism in many cancers. The pathogenesis of …

Tissue differences in the exosomal/small extracellular vesicle proteome and their potential as indicators of altered tissue metabolism

R Garcia-Martin, BB Brandao, T Thomou, E Altindis… - Cell reports, 2022 - cell.com
Exosomes/small extracellular vesicles (sEVs) can serve as multifactorial mediators of cell-to-
cell communication through their miRNA and protein cargo. Quantitative proteomic analysis …

A comprehensive Xist interactome reveals cohesin repulsion and an RNA-directed chromosome conformation

A Minajigi, JE Froberg, C Wei, H Sunwoo, B Kesner… - Science, 2015 - science.org
INTRODUCTION The mammal has evolved an epigenetic mechanism to silence one of two
X chromosomes in the XX female to equalize gene dosages with the XY male. Once …

LKB1 loss links serine metabolism to DNA methylation and tumorigenesis

F Kottakis, BN Nicolay, A Roumane, R Karnik, H Gu… - Nature, 2016 - nature.com
Intermediary metabolism generates substrates for chromatin modification, enabling the
potential coupling of metabolic and epigenetic states. Here we identify a network linking …