Computational approaches streamlining drug discovery
AV Sadybekov, V Katritch - Nature, 2023 - nature.com
Computer-aided drug discovery has been around for decades, although the past few years
have seen a tectonic shift towards embracing computational technologies in both academia …
have seen a tectonic shift towards embracing computational technologies in both academia …
Integrating QSAR modelling and deep learning in drug discovery: the emergence of deep QSAR
Quantitative structure–activity relationship (QSAR) modelling, an approach that was
introduced 60 years ago, is widely used in computer-aided drug design. In recent years …
introduced 60 years ago, is widely used in computer-aided drug design. In recent years …
Modeling the expansion of virtual screening libraries
Recently,'tangible'virtual libraries have made billions of molecules readily available.
Prioritizing these molecules for synthesis and testing demands computational approaches …
Prioritizing these molecules for synthesis and testing demands computational approaches …
ZINC-22─ A free multi-billion-scale database of tangible compounds for ligand discovery
BI Tingle, KG Tang, M Castanon… - Journal of chemical …, 2023 - ACS Publications
Purchasable chemical space has grown rapidly into the tens of billions of molecules,
providing unprecedented opportunities for ligand discovery but straining the tools that might …
providing unprecedented opportunities for ligand discovery but straining the tools that might …
Epik: pKa and Protonation State Prediction through Machine Learning
RC Johnston, K Yao, Z Kaplan, M Chelliah… - Journal of chemical …, 2023 - ACS Publications
Epik version 7 is a software program that uses machine learning for predicting the p K a
values and protonation state distribution of complex, druglike molecules. Using an ensemble …
values and protonation state distribution of complex, druglike molecules. Using an ensemble …
Chemical multiverse: an expanded view of chemical space
JL Medina‐Franco, AL Chávez‐Hernández… - Molecular …, 2022 - Wiley Online Library
Technological advances and practical applications of the chemical space concept in drug
discovery, natural product research, and other research areas have attracted the scientific …
discovery, natural product research, and other research areas have attracted the scientific …
[HTML][HTML] Industrializing AI/ML during the end-to-end drug discovery process
Drug discovery aims to select proper targets and drug candidates to address unmet clinical
needs. The end-to-end drug discovery process includes all stages of drug discovery from …
needs. The end-to-end drug discovery process includes all stages of drug discovery from …
[HTML][HTML] Navigating large chemical spaces in early-phase drug discovery
The size of actionable chemical spaces is surging, owing to a variety of novel techniques,
both computational and experimental. As a consequence, novel molecular matter is now at …
both computational and experimental. As a consequence, novel molecular matter is now at …
Keeping pace with the explosive growth of chemical libraries with structure‐based virtual screening
J Kuan, M Radaeva, A Avenido… - Wiley …, 2023 - Wiley Online Library
Recent efforts to synthetically expand drug‐like chemical libraries have led to the
emergence of unprecedently large virtual databases. This surge of make‐on‐demand …
emergence of unprecedently large virtual databases. This surge of make‐on‐demand …
Streamlining large chemical library docking with artificial intelligence: the PyRMD2Dock approach
M Roggia, B Natale, G Amendola… - Journal of Chemical …, 2023 - ACS Publications
The present contribution introduces a novel computational protocol called PyRMD2Dock,
which combines the Ligand-Based Virtual Screening (LBVS) tool PyRMD with the popular …
which combines the Ligand-Based Virtual Screening (LBVS) tool PyRMD with the popular …