Intrinsically disordered proteins from A to Z

VN Uversky - The international journal of biochemistry & cell biology, 2011 - Elsevier
The ideas that proteins might possess specific functions without being uniquely folded into
rigid 3D-structures and that these floppy polypeptides might constitute a noticeable part of …

Rational approaches to improving selectivity in drug design

DJ Huggins, W Sherman, B Tidor - Journal of medicinal chemistry, 2012 - ACS Publications
Appropriate tuning of binding selectivity is a primary objective in the discovery and
optimization of a compound on the path toward developing a drug. The environment in …

DeepAffinity: interpretable deep learning of compound–protein affinity through unified recurrent and convolutional neural networks

M Karimi, D Wu, Z Wang, Y Shen - Bioinformatics, 2019 - academic.oup.com
Motivation Drug discovery demands rapid quantification of compound–protein interaction
(CPI). However, there is a lack of methods that can predict compound–protein affinity from …

Intrinsic disorder and protein function

AK Dunker, CJ Brown, JD Lawson, LM Iakoucheva… - Biochemistry, 2002 - ACS Publications
The dominant view of protein structure-function is that an amino acid sequence specifies a
three-dimensional (3-D) structure that is a prerequisite for protein function. In contrast, many …

Role of the active-site solvent in the thermodynamics of factor Xa ligand binding

R Abel, T Young, R Farid, BJ Berne… - Journal of the American …, 2008 - ACS Publications
Understanding the underlying physics of the binding of small-molecule ligands to protein
active sites is a key objective of computational chemistry and biology. It is widely believed …

Protease inhibitors: current status and future prospects

D Leung, G Abbenante, DP Fairlie - Journal of medicinal chemistry, 2000 - ACS Publications
The four major classes of protease enzymes1-4 (aspartic, serine, cysteine, and metallo)
selectively catalyze the hydrolysis of polypeptide bonds. Their control over protein synthesis …

Exposure of platelet membrane phosphatidylserine regulates blood coagulation

BR Lentz - Progress in lipid research, 2003 - Elsevier
This article addresses the role of platelet membrane phosphatidylserine (PS) in regulating
the production of thrombin, the central regulatory molecule of blood coagulation. PS is …

Rapid and general profiling of protease specificity by using combinatorial fluorogenic substrate libraries

JL Harris, BJ Backes, F Leonetti… - Proceedings of the …, 2000 - National Acad Sciences
A method is presented for the preparation and use of fluorogenic peptide substrates that
allows for the configuration of general substrate libraries to rapidly identify the primary and …

Discovery of the Novel Antithrombotic Agent 5-Chloro-N-({(5S)-2-oxo-3- [4-(3-oxomorpholin-4-yl)phenyl]-1,3-oxazolidin-5-yl}methyl)thiophene- 2-carboxamide (BAY …

S Roehrig, A Straub, J Pohlmann… - Journal of medicinal …, 2005 - ACS Publications
Despite recent progress in antithrombotic therapy, there is still an unmet medical need for
safe and orally available anticoagulants. The coagulation enzyme Factor Xa (FXa) is a …

TFPI is a colonic crypt receptor for TcdB from hypervirulent clade 2 C. difficile

J Luo, Q Yang, X Zhang, Y Zhang, L Wan, X Zhan… - Cell, 2022 - cell.com
The emergence of hypervirulent clade 2 Clostridioides difficile is associated with severe
symptoms and accounts for> 20% of global infections. TcdB is a dominant virulence factor of …