RNA polymerase fidelity and transcriptional proofreading

JF Sydow, P Cramer - Current opinion in structural biology, 2009 - Elsevier
Whereas mechanisms underlying the fidelity of DNA polymerases (DNAPs) have been
investigated in detail, RNA polymerase (RNAP) fidelity mechanisms remained poorly …

T7 RNA polymerase

R Sousa, S Mukherjee, M Kivie - Progress in nucleic acid …, 2003 - books.google.com
Bacteriophage T7 RNA polymerase (RNAP) is the best characterized member of a
widespread family of RNAPs that includes most bacteriophageencoded RNAPs as well as …

[HTML][HTML] Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center

KD Westover, DA Bushnell, RD Kornberg - Cell, 2004 - cell.com
Binding of a ribonucleoside triphosphate to an RNA polymerase II transcribing complex, with
base pairing to the template DNA, was revealed by X-ray crystallography. Binding of a …

A Y639F/H784A T7 RNA polymerase double mutant displays superior properties for synthesizing RNAs with non‐canonical NTPs

R Padilla, R Sousa - Nucleic acids research, 2002 - academic.oup.com
Abstract A T7 RNA polymerase in which Tyr639 is mutated to Phe readily utilizes 2′‐deoxy,
2′‐NH2 and 2′‐F NTPs as substrates and has been widely used to synthesize modified …

[HTML][HTML] Structural basis for substrate selection by T7 RNA polymerase

D Temiakov, V Patlan, M Anikin, WT McAllister… - Cell, 2004 - cell.com
The mechanism by which nucleotide polymerases select the correct substrate is of
fundamental importance to the fidelity of DNA replication and transcription. During the …

[HTML][HTML] Structural basis of transcription recognition of a hydrophobic unnatural base pair by T7 RNA polymerase

J Oh, M Kimoto, H Xu, J Chong, I Hirao… - Nature …, 2023 - nature.com
Abstract Bacteriophage T7 RNA polymerase (T7 RNAP) is widely used for synthesizing RNA
molecules with synthetic modifications and unnatural base pairs (UBPs) for a variety of …

Evolution of a T7 RNA polymerase variant that transcribes 2′-O-methyl RNA

J Chelliserrykattil, AD Ellington - Nature biotechnology, 2004 - nature.com
Modified RNA and DNA molecules have novel properties that their natural counterparts do
not possess, such as better resistance to degradation in cells and improved pharmacokinetic …

Incorporation fidelity of the viral RNA-dependent RNA polymerase: a kinetic, thermodynamic and structural perspective

C Castro, JJ Arnold, CE Cameron - Virus research, 2005 - Elsevier
Positive-strand RNA viruses exist as a quasi-species due to the incorporation of mutations
into the viral genome during replication by the virus-encoded RNA-dependent RNA …

[HTML][HTML] Poliovirus RNA-dependent RNA polymerase (3Dpol): structural, biochemical, and biological analysis of conserved structural motifs A and B

DW Gohara, S Crotty, JJ Arnold, JD Yoder… - Journal of Biological …, 2000 - ASBMB
We have constructed a structural model for poliovirus RNA-dependent RNA polymerase (3D
pol) in complex with a primer-template (sym/sub) and ATP. Residues found in conserved …

Transcription yield of fully 2′-modified RNA can be increased by the addition of thermostabilizing mutations to T7 RNA polymerase mutants

AJ Meyer, DJ Garry, B Hall, MM Byrom… - Nucleic acids …, 2015 - academic.oup.com
On average, mutations are deleterious to proteins. Mutations conferring new function to a
protein often come at the expense of protein folding or stability, reducing overall activity …