RNA polymerase fidelity and transcriptional proofreading
JF Sydow, P Cramer - Current opinion in structural biology, 2009 - Elsevier
Whereas mechanisms underlying the fidelity of DNA polymerases (DNAPs) have been
investigated in detail, RNA polymerase (RNAP) fidelity mechanisms remained poorly …
investigated in detail, RNA polymerase (RNAP) fidelity mechanisms remained poorly …
T7 RNA polymerase
R Sousa, S Mukherjee, M Kivie - Progress in nucleic acid …, 2003 - books.google.com
Bacteriophage T7 RNA polymerase (RNAP) is the best characterized member of a
widespread family of RNAPs that includes most bacteriophageencoded RNAPs as well as …
widespread family of RNAPs that includes most bacteriophageencoded RNAPs as well as …
[HTML][HTML] Structural basis of transcription: nucleotide selection by rotation in the RNA polymerase II active center
KD Westover, DA Bushnell, RD Kornberg - Cell, 2004 - cell.com
Binding of a ribonucleoside triphosphate to an RNA polymerase II transcribing complex, with
base pairing to the template DNA, was revealed by X-ray crystallography. Binding of a …
base pairing to the template DNA, was revealed by X-ray crystallography. Binding of a …
A Y639F/H784A T7 RNA polymerase double mutant displays superior properties for synthesizing RNAs with non‐canonical NTPs
R Padilla, R Sousa - Nucleic acids research, 2002 - academic.oup.com
Abstract A T7 RNA polymerase in which Tyr639 is mutated to Phe readily utilizes 2′‐deoxy,
2′‐NH2 and 2′‐F NTPs as substrates and has been widely used to synthesize modified …
2′‐NH2 and 2′‐F NTPs as substrates and has been widely used to synthesize modified …
[HTML][HTML] Structural basis for substrate selection by T7 RNA polymerase
D Temiakov, V Patlan, M Anikin, WT McAllister… - Cell, 2004 - cell.com
The mechanism by which nucleotide polymerases select the correct substrate is of
fundamental importance to the fidelity of DNA replication and transcription. During the …
fundamental importance to the fidelity of DNA replication and transcription. During the …
[HTML][HTML] Structural basis of transcription recognition of a hydrophobic unnatural base pair by T7 RNA polymerase
Abstract Bacteriophage T7 RNA polymerase (T7 RNAP) is widely used for synthesizing RNA
molecules with synthetic modifications and unnatural base pairs (UBPs) for a variety of …
molecules with synthetic modifications and unnatural base pairs (UBPs) for a variety of …
Evolution of a T7 RNA polymerase variant that transcribes 2′-O-methyl RNA
J Chelliserrykattil, AD Ellington - Nature biotechnology, 2004 - nature.com
Modified RNA and DNA molecules have novel properties that their natural counterparts do
not possess, such as better resistance to degradation in cells and improved pharmacokinetic …
not possess, such as better resistance to degradation in cells and improved pharmacokinetic …
Incorporation fidelity of the viral RNA-dependent RNA polymerase: a kinetic, thermodynamic and structural perspective
C Castro, JJ Arnold, CE Cameron - Virus research, 2005 - Elsevier
Positive-strand RNA viruses exist as a quasi-species due to the incorporation of mutations
into the viral genome during replication by the virus-encoded RNA-dependent RNA …
into the viral genome during replication by the virus-encoded RNA-dependent RNA …
[HTML][HTML] Poliovirus RNA-dependent RNA polymerase (3Dpol): structural, biochemical, and biological analysis of conserved structural motifs A and B
We have constructed a structural model for poliovirus RNA-dependent RNA polymerase (3D
pol) in complex with a primer-template (sym/sub) and ATP. Residues found in conserved …
pol) in complex with a primer-template (sym/sub) and ATP. Residues found in conserved …
Transcription yield of fully 2′-modified RNA can be increased by the addition of thermostabilizing mutations to T7 RNA polymerase mutants
On average, mutations are deleterious to proteins. Mutations conferring new function to a
protein often come at the expense of protein folding or stability, reducing overall activity …
protein often come at the expense of protein folding or stability, reducing overall activity …