Eukaryotic core promoters and the functional basis of transcription initiation

V Haberle, A Stark - Nature reviews Molecular cell biology, 2018 - nature.com
Abstract RNA polymerase II (Pol II) core promoters are specialized DNA sequences at
transcription start sites of protein-coding and non-coding genes that support the assembly of …

Epigenetic memory: the Lamarckian brain

A Fischer - The EMBO journal, 2014 - embopress.org
Recent data support the view that epigenetic processes play a role in memory consolidation
and help to transmit acquired memories even across generations in a Lamarckian manner …

The Drosophila embryo at single-cell transcriptome resolution

N Karaiskos, P Wahle, J Alles, A Boltengagen, S Ayoub… - Science, 2017 - science.org
By the onset of morphogenesis, Drosophila embryos consist of about 6000 cells that express
distinct gene combinations. Here, we used single-cell sequencing of precisely staged …

The cis-regulatory dynamics of embryonic development at single-cell resolution

DA Cusanovich, JP Reddington, DA Garfield, RM Daza… - Nature, 2018 - nature.com
Understanding how gene regulatory networks control the progressive restriction of cell fates
is a long-standing challenge. Recent advances in measuring gene expression in single cells …

Enhancer loops appear stable during development and are associated with paused polymerase

Y Ghavi-Helm, FA Klein, T Pakozdi, L Ciglar… - Nature, 2014 - nature.com
Developmental enhancers initiate transcription and are fundamental to our understanding of
developmental networks, evolution and disease. Despite their importance, the properties …

DNA methylation changes in plasticity genes accompany the formation and maintenance of memory

R Halder, M Hennion, RO Vidal, O Shomroni… - Nature …, 2016 - nature.com
The ability to form memories is a prerequisite for an organism's behavioral adaptation to
environmental changes. At the molecular level, the acquisition and maintenance of memory …

The degree of enhancer or promoter activity is reflected by the levels and directionality of eRNA transcription

O Mikhaylichenko, V Bondarenko… - Genes & …, 2018 - genesdev.cshlp.org
Gene expression is regulated by promoters, which initiate transcription, and enhancers,
which control their temporal and spatial activity. However, the discovery that mammalian …

Dynamic DNA methylation orchestrates cardiomyocyte development, maturation and disease

R Gilsbach, S Preissl, BA Grüning, T Schnick… - Nature …, 2014 - nature.com
The heart is a highly specialized organ with essential function for the organism throughout
life. The significance of DNA methylation in shaping the phenotype of the heart remains only …

High-throughput chromatin immunoprecipitation for genome-wide mapping of in vivo protein-DNA interactions and epigenomic states

R Blecher-Gonen, Z Barnett-Itzhaki, D Jaitin… - Nature protocols, 2013 - nature.com
Dynamic protein binding to DNA elements regulates genome function and cell fate. Although
methods for mapping in vivo protein-DNA interactions are becoming crucial for every aspect …

Islands of retroelements are major components of Drosophila centromeres

CH Chang, A Chavan, J Palladino, X Wei… - PLoS …, 2019 - journals.plos.org
Centromeres are essential chromosomal regions that mediate kinetochore assembly and
spindle attachments during cell division. Despite their functional conservation, centromeres …