[HTML][HTML] Comparative analyses of gene co-expression networks: Implementations and applications in the study of evolution
Similarities and differences in the associations of biological entities among species can
provide us with a better understanding of evolutionary relationships. Often the evolution of …
provide us with a better understanding of evolutionary relationships. Often the evolution of …
[HTML][HTML] Large-scale genome sequencing reveals the driving forces of viruses in microalgal evolution
Being integral primary producers in diverse ecosystems, microalgal genomes could be
mined for ecological insights, but representative genome sequences are lacking for many …
mined for ecological insights, but representative genome sequences are lacking for many …
[HTML][HTML] SANA: cross-species prediction of Gene Ontology GO annotations via topological network alignment
S Wang, GRS Atkinson, WB Hayes - NPJ systems biology and …, 2022 - nature.com
Topological network alignment aims to align two networks node-wise in order to maximize
the observed common connection (edge) topology between them. The topological alignment …
the observed common connection (edge) topology between them. The topological alignment …
[HTML][HTML] Design and implementation of a new local alignment algorithm for multilayer networks
Network alignment (NA) is a popular research field that aims to develop algorithms for
comparing networks. Applications of network alignment span many fields, from biology to …
comparing networks. Applications of network alignment span many fields, from biology to …
Extended multitarget pharmacology of anticancer drugs
Multitarget pharmacology of small-molecule cancer drugs significantly contributes to their
mechanism of action, side effects, and emergence of drug resistance and opens ways to …
mechanism of action, side effects, and emergence of drug resistance and opens ways to …
[HTML][HTML] Data-driven network alignment
S Gu, T Milenković - PloS one, 2020 - journals.plos.org
In this study, we deal with the problem of biological network alignment (NA), which aims to
find a node mapping between species' molecular networks that uncovers similar network …
find a node mapping between species' molecular networks that uncovers similar network …
[HTML][HTML] A protein-protein interaction network aligner study in the multi-objective domain
M Menor-Flores, MA Vega-Rodríguez - Computer Methods and Programs …, 2024 - Elsevier
Abstract Background and Objective The protein-protein interaction (PPI) network alignment
has proven to be an efficient technique in the diagnosis and prevention of certain diseases …
has proven to be an efficient technique in the diagnosis and prevention of certain diseases …
[HTML][HTML] Data-driven biological network alignment that uses topological, sequence, and functional information
S Gu, T Milenković - BMC bioinformatics, 2021 - Springer
Background Network alignment (NA) can transfer functional knowledge between species'
conserved biological network regions. Traditional NA assumes that it is topological similarity …
conserved biological network regions. Traditional NA assumes that it is topological similarity …
[图书][B] An introductory guide to aligning networks using sana, the simulated annealing network aligner
WB Hayes - 2020 - Springer
Sequence alignment has had an enormous impact on our understanding of biology,
evolution, and disease. The alignment of biological networks holds similar promise …
evolution, and disease. The alignment of biological networks holds similar promise …
[图书][B] Novel Computational Approaches for Multi-network Analysis to Improve Protein Function Prediction
S Gu - 2022 - search.proquest.com
Networks can be used to model complex real-world systems from many domains, including
computational biology. A protein-protein interaction (PPI) network (PPIN), in which nodes …
computational biology. A protein-protein interaction (PPI) network (PPIN), in which nodes …