The emergence of modularity in biological systems

DM Lorenz, A Jeng, MW Deem - Physics of life reviews, 2011 - Elsevier
In this review, we discuss modularity and hierarchy in biological systems. We review
examples from protein structure, genetics, and biological networks of modular partitioning of …

The robustness and innovability of protein folds

A Toth-Petroczy, DS Tawfik - Current opinion in structural biology, 2014 - Elsevier
Highlights•Robustness relates to mutations having minimal effects on structure and
function.•Innovability means that beneficial functional changes are induced by few …

The evolution of phenotypic correlations and “developmental memory”

RA Watson, GP Wagner, M Pavlicev, DM Weinreich… - …, 2014 - academic.oup.com
Abstract Development introduces structured correlations among traits that may constrain or
bias the distribution of phenotypes produced. Moreover, when suitable heritable variation …

How evolution learns to generalise: Using the principles of learning theory to understand the evolution of developmental organisation

K Kouvaris, J Clune, L Kounios, M Brede… - PLoS computational …, 2017 - journals.plos.org
One of the most intriguing questions in evolution is how organisms exhibit suitable
phenotypic variation to rapidly adapt in novel selective environments. Such variability is …

The collective intelligence of evolution and development

R Watson, M Levin - Collective Intelligence, 2023 - journals.sagepub.com
Collective intelligence and individual intelligence are usually considered to be
fundamentally different. Individual intelligence is uncontroversial. It occurs in organisms with …

Evolution of bow-tie architectures in biology

T Friedlander, AE Mayo, T Tlusty… - PLoS computational …, 2015 - journals.plos.org
Bow-tie or hourglass structure is a common architectural feature found in many biological
systems. A bow-tie in a multi-layered structure occurs when intermediate layers have much …

Evolutionary connectionism: algorithmic principles underlying the evolution of biological organisation in evo-devo, evo-eco and evolutionary transitions

RA Watson, R Mills, CL Buckley, K Kouvaris… - Evolutionary …, 2016 - Springer
The mechanisms of variation, selection and inheritance, on which evolution by natural
selection depends, are not fixed over evolutionary time. Current evolutionary biology is …

A spectrum of modularity in multi‐functional gene circuits

A Jiménez, J Cotterell, A Munteanu… - Molecular systems …, 2017 - embopress.org
A major challenge in systems biology is to understand the relationship between a circuit's
structure and its function, but how is this relationship affected if the circuit must perform …

Evolution of networks for body plan patterning; interplay of modularity, robustness and evolvability

KH Ten Tusscher, P Hogeweg - PLoS computational biology, 2011 - journals.plos.org
A major goal of evolutionary developmental biology (evo-devo) is to understand how
multicellular body plans of increasing complexity have evolved, and how the corresponding …

Rapid transition towards the division of labor via evolution of developmental plasticity

S Gavrilets - PLoS computational biology, 2010 - journals.plos.org
A crucial step in several major evolutionary transitions is the division of labor between
components of the emerging higher-level evolutionary unit. Examples include the separation …