Prospects and challenges of applied genomic selection—a new paradigm in breeding for grain yield in bread wheat

P Juliana, RP Singh, J Poland, S Mondal… - The plant …, 2018 - Wiley Online Library
Genomic selection (GS) has been promising for increasing genetic gains in several species.
Therefore, we evaluated the potential integration of GS for grain yield (GY) in bread wheat …

Comparing different statistical models and multiple testing corrections for association mapping in soybean and maize

AS Kaler, JD Gillman, T Beissinger… - Frontiers in plant …, 2020 - frontiersin.org
Association mapping (AM) is a powerful tool for fine mapping complex trait variation down to
nucleotide sequences by exploiting historical recombination events. A major problem in AM …

Genomic prediction of maize yield across European environmental conditions

EJ Millet, W Kruijer, A Coupel-Ledru, S Alvarez Prado… - Nature …, 2019 - nature.com
The development of germplasm adapted to changing climate is required to ensure food
security,. Genomic prediction is a powerful tool to evaluate many genotypes but performs …

Estimation of a significance threshold for genome-wide association studies

AS Kaler, LC Purcell - BMC genomics, 2019 - Springer
Background Selection of an appropriate statistical significance threshold in genome-wide
association studies is critical to differentiate true positives from false positives and false …

Genetic components of root architecture remodeling in response to salt stress

MM Julkowska, IT Koevoets, S Mol, H Hoefsloot… - The plant …, 2017 - academic.oup.com
Salinity of the soil is highly detrimental to plant growth. Plants respond by a redistribution of
root mass between main and lateral roots, yet the genetic machinery underlying this process …

Genome-Wide Association Study of Salinity Tolerance During Germination in Barley (Hordeum vulgare L.)

E Mwando, Y Han, TT Angessa, G Zhou… - Frontiers in plant …, 2020 - frontiersin.org
Barley seeds need to be able to germinate and establish seedlings in saline soils in
Mediterranean-type climates. Despite being a major cereal crop, barley has few reported …

Genetic architecture of plant stress resistance: multi‐trait genome‐wide association mapping

MPM Thoen, NH Davila Olivas, KJ Kloth… - New …, 2017 - Wiley Online Library
Plants are exposed to combinations of various biotic and abiotic stresses, but stress
responses are usually investigated for single stresses only. Here, we investigated the …

Genome-wide analysis of yield in Europe: allelic effects vary with drought and heat scenarios

EJ Millet, C Welcker, W Kruijer, S Negro… - Plant …, 2016 - academic.oup.com
Assessing the genetic variability of plant performance under heat and drought scenarios can
contribute to reduce the negative effects of climate change. We propose here an approach …

Genetic variance partitioning and genome-wide prediction with allele dosage information in autotetraploid potato

JB Endelman, CAS Carley, PC Bethke, JJ Coombs… - Genetics, 2018 - academic.oup.com
As one of the world's most important food crops, the potato (Solanum tuberosum L.) has
spurred innovation in autotetraploid genetics, including in the use of SNP arrays to …

A genomic resource for the development, improvement, and exploitation of sorghum for bioenergy

ZW Brenton, EA Cooper, MT Myers, RE Boyles… - Genetics, 2016 - academic.oup.com
With high productivity and stress tolerance, numerous grass genera of the Andropogoneae
have emerged as candidates for bioenergy production. To optimize these candidates …