Protein analysis by shotgun/bottom-up proteomics
According to Genome Sequencing Project statistics (http://www. ncbi. nlm. nih.
gov/genomes/static/gpstat. html), as of February 16, 2012, complete gene sequences have …
gov/genomes/static/gpstat. html), as of February 16, 2012, complete gene sequences have …
Status of large-scale analysis of post-translational modifications by mass spectrometry
Cellular function can be controlled through the gene expression program, but often protein
post-translational modifications (PTMs) provide a more precise and elegant mechanism. Key …
post-translational modifications (PTMs) provide a more precise and elegant mechanism. Key …
Universal and confident phosphorylation site localization using phosphoRS
T Taus, T Köcher, P Pichler, C Paschke… - Journal of proteome …, 2011 - ACS Publications
An algorithm for the assignment of phosphorylation sites in peptides is described. The
program uses tandem mass spectrometry data in conjunction with the respective peptide …
program uses tandem mass spectrometry data in conjunction with the respective peptide …
Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis
Eukaryotic cells replicate by a complex series of evolutionarily conserved events that are
tightly regulated at defined stages of the cell division cycle. Progression through this cycle …
tightly regulated at defined stages of the cell division cycle. Progression through this cycle …
Global, in vivo, and site-specific phosphorylation dynamics in signaling networks
Cell signaling mechanisms often transmit information via posttranslational protein
modifications, most importantly reversible protein phosphorylation. Here we develop and …
modifications, most importantly reversible protein phosphorylation. Here we develop and …
Decoding signalling networks by mass spectrometry-based proteomics
C Choudhary, M Mann - Nature reviews Molecular cell biology, 2010 - nature.com
Signalling networks regulate essentially all of the biology of cells and organisms in normal
and disease states. Signalling is often studied using antibody-based techniques such as …
and disease states. Signalling is often studied using antibody-based techniques such as …
The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry
The success in profiling the phosphoproteome by mass spectrometry-based proteomics has
been intimately related to the availability of methods that selectively enrich for …
been intimately related to the availability of methods that selectively enrich for …
A perspective on the Maillard reaction and the analysis of protein glycation by mass spectrometry: probing the pathogenesis of chronic disease
The Maillard reaction, starting from the glycation of protein and progressing to the formation
of advanced glycation end-products (AGEs), is implicated in the development of …
of advanced glycation end-products (AGEs), is implicated in the development of …
Analytical strategies for phosphoproteomics
Protein phosphorylation is a key regulator of cellular signaling pathways. It is involved in
most cellular events in which the complex interplay between protein kinases and protein …
most cellular events in which the complex interplay between protein kinases and protein …
Systematic evaluation of protein reduction and alkylation reveals massive unspecific side effects by iodine-containing reagents
Reduction and alkylation of cysteine residues is part of virtually any proteomics workflow.
Despite its frequent use, up to date no systematic investigation of the impact of different …
Despite its frequent use, up to date no systematic investigation of the impact of different …