Semantic web meets integrative biology: a survey
Integrative Biology (IB) uses experimental or computational quantitative technologies to
characterize biological systems at the molecular, cellular, tissue and population levels. IB …
characterize biological systems at the molecular, cellular, tissue and population levels. IB …
Chem2Bio2RDF: a semantic framework for linking and data mining chemogenomic and systems chemical biology data
Background Recently there has been an explosion of new data sources about genes,
proteins, genetic variations, chemical compounds, diseases and drugs. Integration of these …
proteins, genetic variations, chemical compounds, diseases and drugs. Integration of these …
Assessing drug target association using semantic linked data
The rapidly increasing amount of public data in chemistry and biology provides new
opportunities for large-scale data mining for drug discovery. Systematic integration of these …
opportunities for large-scale data mining for drug discovery. Systematic integration of these …
Results of the ontology alignment evaluation initiative 2010
Ontology matching consists of finding correspondences between entities of two ontologies.
OAEI campaigns aim at comparing ontology matching systems on precisely defined test …
OAEI campaigns aim at comparing ontology matching systems on precisely defined test …
Scalable and distributed methods for entity matching, consolidation and disambiguation over linked data corpora
With respect to large-scale, static, Linked Data corpora, in this paper we discuss scalable
and distributed methods for entity consolidation (aka. smushing, entity resolution, object …
and distributed methods for entity consolidation (aka. smushing, entity resolution, object …
The Translational Medicine Ontology and Knowledge Base: driving personalized medicine by bridging the gap between bench and bedside
JS Luciano, B Andersson, C Batchelor… - Journal of biomedical …, 2011 - Springer
Background Translational medicine requires the integration of knowledge using
heterogeneous data from health care to the life sciences. Here, we describe a collaborative …
heterogeneous data from health care to the life sciences. Here, we describe a collaborative …
Finding complex biological relationships in recent PubMed articles using Bio-LDA
The overwhelming amount of available scholarly literature in the life sciences poses
significant challenges to scientists wishing to keep up with important developments related …
significant challenges to scientists wishing to keep up with important developments related …
Emerging practices for mapping and linking life sciences data using RDF—A case series
Members of the W3C Health Care and Life Sciences Interest Group (HCLS IG) have
published a variety of genomic and drug-related data sets as Resource Description …
published a variety of genomic and drug-related data sets as Resource Description …
A more decentralized vision for linked data
In this deliberately provocative position paper, we claim that more than ten years into Linked
Data there are still (too?) many unresolved challenges towards arriving at a truly machine …
Data there are still (too?) many unresolved challenges towards arriving at a truly machine …