Toward autonomous laboratories: Convergence of artificial intelligence and experimental automation

Y Xie, K Sattari, C Zhang, J Lin - Progress in Materials Science, 2023 - Elsevier
The ever-increasing demand for novel materials with superior properties inspires retrofitting
traditional research paradigms in the era of artificial intelligence and automation. An …

Black-box optimization for automated discovery

K Terayama, M Sumita, R Tamura… - Accounts of Chemical …, 2021 - ACS Publications
Conspectus In chemistry and materials science, researchers and engineers discover,
design, and optimize chemical compounds or materials with their professional knowledge …

Adaptive neural decision tree for EEG based emotion recognition

Y Zheng, J Ding, F Liu, D Wang - Information Sciences, 2023 - Elsevier
An adaptive neural decision tree is investigated to recognize electroencephalogram (EEG)
emotion signal with ability of intelligently selecting network structure. Firstly, to overcome …

Multiagent reinforcement learning-based adaptive sampling for conformational dynamics of proteins

DE Kleiman, D Shukla - Journal of Chemical Theory and …, 2022 - ACS Publications
Machine learning is increasingly applied to improve the efficiency and accuracy of molecular
dynamics (MD) simulations. Although the growth of distributed computer clusters has …

Accelerating copolymer inverse design using monte carlo tree search

TK Patra, TD Loeffler, SKRS Sankaranarayanan - Nanoscale, 2020 - pubs.rsc.org
There exists a broad class of sequencing problems in soft materials such as proteins and
polymers that can be formulated as a heuristic search that involves decision making akin to …

[HTML][HTML] Differentiable molecular simulation can learn all the parameters in a coarse-grained force field for proteins

JG Greener, DT Jones - PloS one, 2021 - journals.plos.org
Finding optimal parameters for force fields used in molecular simulation is a challenging and
time-consuming task, partly due to the difficulty of tuning multiple parameters at once …

Molecular simulations of amyloid beta assemblies

G Grasso, A Danani - Advances in Physics: X, 2020 - Taylor & Francis
Several neurodegenerative disorders arise from the abnormal protein aggregation in the
nervous tissue leading tointracellular inclusions or extracellular aggregates in specific brain …

Learning with delayed rewards—a case study on inverse defect design in 2D materials

S Banik, TD Loeffler, R Batra, H Singh… - … Applied Materials & …, 2021 - ACS Publications
Defect dynamics in materials are of central importance to a broad range of technologies from
catalysis to energy storage systems to microelectronics. Material functionality depends …

PaCS-Toolkit: Optimized Software Utilities for Parallel Cascade Selection Molecular Dynamics (PaCS-MD) Simulations and Subsequent Analyses

S Ikizawa, T Hori, TN Wijaya, H Kono… - The Journal of …, 2024 - ACS Publications
Parallel cascade selection molecular dynamics (PaCS-MD) is an enhanced conformational
sampling method conducted as a “repetition of time leaps in parallel worlds”, comprising …

Thirty years of molecular dynamics simulations on posttranslational modifications of proteins

AT Weigle, J Feng, D Shukla - Physical Chemistry Chemical Physics, 2022 - pubs.rsc.org
Posttranslational modifications (PTMs) are an integral component to how cells respond to
perturbation. While experimental advances have enabled improved PTM identification …